XLOC_026981


Basic Information

Item Value
gene id XLOC_026981
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 1825603 ~ 1827105 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00057510
CTCGCGTCTGCTGGAAGCAGGTGGGAACCAAACGTTGTAACGGCGTCAGGTAAGTtcactgtataaaatatatatttttcgacatattttattattttcacctggATTAAAGCATTCGTAGTGTAAAATGTCTTTTTGCCATCTCAAATGAGCTCCACATTACGTGAAATGCGGACAAAATAAACGAGTCCAAATAACAATACCAGCGGGTCATTGAtaagtaatatttacattagttgtATCAGAAAAAAGTCATAACAACCTTAAATGTTATGGGAAACGATTTAATTATTACATGTGTCTTAAACAttgggataaaaaaaaacaggaattaAGGTGCCAACACAAACTTCCCTTATGAAAATGTGCCTTTACTGTATAAGTTATTACTGACCAAGTCAAAATATGTTAACCATTGCAACCATTAAGTGAAACTGTGGTTACCACAAAAACATATTGGTTTAaagtttttgttaatttaataataaaaaataatcgtGTTAATTGTTATAAACTGTGGTTATAAACAAATTGTAATCAATATGCCACAAATATttacagctaaagtcagaattattagcccccctttgagtttcttttaaaaatatttcctaaatgatgtttaacagagcaaagaaattttcacagtgtgtctgataatattttttcttctggagaaagtctgatttgttttattttggctggaataaaatcagtttttaattttttaaacaccattttaaggacaaaattattagccttttaaggctatttttttccgatagtctacagaacaaaccatcgttgtacaataacttgcctaattaccctaacctgcctagttaagcctttaaatgtcactttaagctatatacaagtgtcttgaaaaatatctagtcaaatattatttactgtcatcatggcaaagataaaataaatcagttattagagatgagttattaaaactattatgattagaaatgtgttgagaaaatctgctctgttaaacagaaaacatggaaaaaaataaatagggggggctaataattctgacttcaactgtatattgaaatattaaaatacaaatggttaatttttacaaaagtttaactttgttttatataatgtttatttttataatgtcagttttatacatttatttatttatcttttataggTGGATATACATGTTTTCCAATGCTGAAGTGAGTGAAAGTTACTGAAGGGTCGGAGAGTTACCGTCAGGTAAGAAACGATGAAATTCTGTTGTTCTCACAACAGAAAGTTATACTTTTTAAAGTTGATGtgctaaaataactaaaactgacacttaaaaatacattttatacatgtaAAAACATAAACGagtaaaacaaacaatcaaaaaataattaatgatgacTTAAATTCATTAATAAGCATTCCTGAATACAAAACAAGACCATAATCTGTGTAATCCATCGTTTTATTTACTGCCATTTCTAAAACAACAGCAATTCCACA

Function

GO:

id name namespace
GO:0048468 cell development biological_process
GO:1901532 regulation of hematopoietic progenitor cell differentiation biological_process
GO:0030154 cell differentiation biological_process
GO:0019857 5-methylcytosine metabolic process biological_process
GO:0048856 anatomical structure development biological_process
GO:0048863 stem cell differentiation biological_process
GO:0048869 cellular developmental process biological_process
GO:0006211 5-methylcytosine catabolic process biological_process
GO:0070579 methylcytosine dioxygenase activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00057510 True 1503 lncRNA 0.29 1 1825603 1827105

Neighbor

gene id symbol gene type direction distance location
XLOC_026980 pmpcb coding upstream 54295 1761029 ~ 1771308 (+)
XLOC_026979 med21 coding upstream 66048 1757462 ~ 1759555 (+)
XLOC_026978 NA coding upstream 90379 1732827 ~ 1735224 (+)
XLOC_026977 fgfr1op2 coding upstream 94683 1722899 ~ 1730920 (+)
XLOC_026976 NA coding upstream 136246 1686486 ~ 1689357 (+)
XLOC_026982 NA coding downstream 15864 1842969 ~ 1845156 (+)
XLOC_026983 NA coding downstream 18525 1845630 ~ 1852654 (+)
XLOC_026984 NA coding downstream 30378 1857483 ~ 1862512 (+)
XLOC_026985 NA coding downstream 38455 1865560 ~ 1866450 (+)
XLOC_026986 NA coding downstream 109372 1936477 ~ 1952999 (+)
XLOC_026975 NA non-coding upstream 140094 1684028 ~ 1685509 (+)
XLOC_026972 NA non-coding upstream 231791 1576850 ~ 1593812 (+)
XLOC_026969 NA non-coding upstream 374548 1447055 ~ 1451055 (+)

Expression


Co-expression Network