XLOC_026986


Basic Information

Item Value
gene id XLOC_026986
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 1936477 ~ 1952999 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00057517
ATATCTGTGACGATCCTCCTCGCTGGATGTCTGATACAAGGTCCCGCTCATAgTGTTTTATGTGGCTTCAGTATCAGTCTGCCGGAGAGAGTAGAAGCTCTAGAAGGATCCTGTGTTTTTATATCCTGCACATTCCAGATTGATCAAACATATAATGCTTACCTCACTGATTCTGCAAAGAGATTATGGTATAAAGATGGAAAAGATGCAGTTTTGGTGTTTAACTCCAGCAGCCCTGACAGTGGACTCTTAACAGGAGAAATATTTGGTAAACCTACAGAGAAAAACTGCAGCACTCGCTTCAATAATCTCAAACCAACAGACAATGGATCATATTTCTTCAGACTTGAAGGCAACGGTGGACTGAAATGGAGCTACAGAAACCCTGATTTCTCCCAAGTTGAAATAGTTGTCAGAGcgTCTCCACCCAATCCCACAGTGCTTCTGTTTCAGGATCAGCAGGAGGTGATGGAGGTGACGGAGGGAAAATCAGTGACTCTGAGCTGCTCTATTAAGATCTTTTGTCCATTTCATCCACCATCTCTCACATGGAGCTTCAGTCCTGAACTCCTCATCAATGCAAACATCACAGAACAGCAGCATCAAAGCCAAACACATTACTACTCTGATCTGATGTTCACTGTAACTCATCATCATCACAGAGCTGAATTCACCTGCACTGCAACACAGCAGCAGATCACAACACACAGCACCCGACAGCTACATGTTCAGTATGCTCCAAAAAACACATCTGTTCATATATACGGTGCAGCAGTGGAGGGTcattcagtgactctgagctgcagcagtgaAGCAAACCCAGCAGCGAACTACAGCTGGTACAGACACACTGAAGGAGACCTGGAACCACCGACTGGACCAAACCTGACTATCAGCAACACCAACCGGTCTCACAGTGGACGATACTACTGTTCAGCTGAAAACCAACACGGAGCTCAGAACATATCAGTGCTGCTGGACGTCCAGTATGCTCCTAAAAGTGTCTCTGCTCATGTGAGTCCAGCTGGTGTGATTGTGGAGGGTcattcagtgactctgagctgcagcagtgaAGCAAACCCAGCAGTCAAATACAGCTGGTACAGACACAACCAAAACATGAGCAAAATAAATTTGACTGGACCAAACCTGACCATCAGCAATGTCAACCCGGCCCACAGAGGACGATACTACTGTAGAGCTGAAAACCAACACGGGACTCAGAACACATCAGTGCTGCTGGACGTCCAGTttccACCCAAAATCTCCAGCTCTTGTAGCCAAAACGACACACTCGTCTGCATCTGTAAGGTTGACGGGAATCCTCTGCCTAAACTACAGTGGCGTCTGTCTGGAAATGTTCTCAATTCCACTGAAGAAATGCAGATAAGTGAGCAAACTGTAGGAAACAAGAGCTTGGAGAGCATCCTGAGCATCCGCCAGTCTCTCTCAGACTCATCAGTCCTGCAGTGTTGGACTGCAAACGCTCACGGATCC
>TCONS_00053253
AATCAGTGACTCTGAGCTGCTCTATTAAGATCTTTTGTCCATTTCATCCACCATCTCTCACATGGAGCTTCAGTCCTGAACTCCTCATCAATGCAAACATCACAGAACAGCAGCATCAAAGCCAAACACATTACTACTCTGATCTGATGTTCACTGTAACTCATCATCATCACAGAGCTGAATTCACCTGCACTGCAACACAGCAGCAGATCACAACACACAGCACCCGACAGCTACATGTTCAGTATGCTCCTAAAAGTGTCTCTGCTCATGTGAGTCCAGCTGGTGTGATTGTGGAGGGTcattcagtgactctgagctgcagcagtgaAGCAAACCCAGCAGTCAAATACAGCTGGTACAGACACACTGAAGAAGACCTGAAACTACTGACTGGACCAAACCTGATCATCAGCAACACAAATATGACCATCAGACACACCAACCTGACAATCAGCAACCAAAACATGAGCAAAATAAATTTGACTGGACCAAACCTGACCATCAGCAATGTCAACCCGGCCCACAGAGGACGATACTACTGTAGAGCTGAAAACCAACACGGGACTCAGAACACATCAGTGCTGCTGGACGTCCAGTttccACCCAAAATCTCCAGCTCTTGTAGCCAAAACGACACACTCGTCTGCATCTGTAAGGTTGACGGGAATCCTCTGCCTAAACTACAGTGGCGTCTGTCTGGAAATGTTCTCAATTCCACTGAAGAAATGCAGATAAGTGAGCAAACTGTAGGAAACAAGAGCTTGGAGAGCATCCTGAGCATCCGCCAGTCTCTCTCAGACTCATCAGTCCTGCAGTGTTGGACTGCAAACGCTCACGGATCCGCCAGCCACCAGTTTCAGCACATCACAACAACACCAGACACAGGTCTCCATCCTGCATGTTTGCTGCTGGGATTTTCTGTAGGAGCATCACTCGTCCTGATCTTCTGTGTTCTGACCGTCTGCAATGAACGAAAAAAGTCTAGAAAACTTTCAGAAAGCAGACAAGACAACGCTTCTGAACTCATTCGGACTGAAAGCAAAACCTTGCTGTCGTCCACATTGATCACGTC
>TCONS_00053254
tgcagcagtgaAGCAAACCCAGCAGCGAACTACAGCTGGTACAGACACACTGAAGGAGACCTGGAACCACCGACTGGACCAAACCTGACTATCAGCAACACCAACCTGACTGGACCAAACCTGACCATCAGCAATGTCAACCCGGCCCACAGAGGACGATACTACTGTAGAGCTGAAAACCAACACGGGACTCAGAACACATCAGTGCTGCTGGACGTCCAGTttccACCCAAAATCTCCAGCTCTTGTAGCCAAAACGACACACTCGTCTGCATCTGTAAGGTTGACGGGAATCCTCTGCCTAAACTACAGTGGCGTCTGTCTGGAAATGTTCTCAATTCCACTGAAGAAATGCAGATAAGTGAGCAAACTGTAGGAAACAAGAGCTTGGAGAGCATCCTGAGCATCCGCCAGTCTCTCTCAGACTCATCAGTCCTGCAGTGTTGGACTGCAAACGCTCACGGATCCGCCAGCCACCAGTTTCAGCACATCACAACAACACCAGACACAGGTCTCCATCCTGCATGTTTGCTGCTGGGATTTTCTGTAGGAGCATCACTCGTCCTG
>TCONS_00057518
GCCCACAGAGGACGATACTACTGTAGAGCTGAAAACCAACACGGGACTCAGAACACATCAGTGCTGCTGGACGTCCAGTCCCTCATCAGCAGACGGACTAATTTCTGTCTTCTCCCATCTGACGATTAACACTTAAAGTCGAGCATCGCAGCTTCTGGCATGagaaaacaaagaattaaatatGTCATTGCTTACAAACATGATCAATATTTATCTGTTCACTTTCTGTTGTTTATGCTGGG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDARG00000094007

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00057517 False 1497 lncRNA 0.47 7 1936477 1941248
TCONS_00053253 False 1075 processed_transcript 0.47 6 1937522 1943586
TCONS_00053254 False 567 processed_transcript 0.51 4 1937920 1942155
TCONS_00057518 True 242 lncRNA 0.43 2 1938593 1952999

Neighbor

gene id symbol gene type direction distance location
XLOC_026985 NA coding upstream 70027 1865560 ~ 1866450 (+)
XLOC_026984 NA coding upstream 73965 1857483 ~ 1862512 (+)
XLOC_026983 NA coding upstream 83823 1845630 ~ 1852654 (+)
XLOC_026982 NA coding upstream 91321 1842969 ~ 1845156 (+)
XLOC_026981 NA coding upstream 109372 1825603 ~ 1827105 (+)
XLOC_026988 NA coding downstream 30664 1983663 ~ 1986858 (+)
XLOC_026989 yeats4 coding downstream 106693 2059692 ~ 2062435 (+)
XLOC_026990 frs2a coding downstream 139684 2092683 ~ 2099581 (+)
XLOC_026991 cmah coding downstream 275755 2228754 ~ 2250264 (+)
XLOC_026992 glipr1a coding downstream 299124 2252123 ~ 2258796 (+)
XLOC_026994 NA non-coding downstream 392649 2345648 ~ 2349381 (+)
XLOC_026995 NA non-coding downstream 399773 2352772 ~ 2355189 (+)
XLOC_026997 BX072538.1 non-coding downstream 628917 2581916 ~ 2582031 (+)
XLOC_026998 NA non-coding downstream 635158 2588157 ~ 2588403 (+)

Expression


Co-expression Network