XLOC_026987


Basic Information

Item Value
gene id XLOC_026987
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 1950010 ~ 1974894 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00057110
TTCAGCATGTTCACTGTGTTTGtgtttgtgtttgtttcaggTGGTTTATGTGGCTTCAGTATCAGTCTGCCGTACAGAGTAGAAGCTCTAGAAGGATCCTGTGTTTTTATACCCTGCATATTCCAGATTGATGAAGATTATAAAGATGACCTCACTGATGCTGCAAAGGGATTATGGTATAAAGAAATATACCCTTCTGGTTTGGTGTTTAACTCCAGCAGCCCTGACAGTGGACAGTTAAAAGGAGAAATGTTTGACAAAGCTACAGAGAAAAACTGCAGCACTCGCTTCGATAATCTCAAACTCACAGACAGTGGCTCATATTACTTCAGACTTGAAAGCAACGGTGGACTAAAATGGAGCTACATAGAAGTTGAAATTGTCATCAAAGCGTCTCCACCCAATCCCACAGTGCTTCTGTTTCAGGATCAGCAGGAGGTGATGGAGGTGACGGAGGGAAAATCAGTGACTCTGAGCTGCTTTAAGATCTTCTGTCCGTCTCTTCCATCATCTCTCACATGGAGCTTCAGTCCTGAACACCTCATCAATGCAAACATCACAGAACAGCAGCATCAAAACCAAACACATTACTACTCTGATCTGATGTTCACTGTAACTCAGCATCATCACAGAGCTGAATTCACCTGCACTGCAACACAGCAGCAGATCACAACACACAGCACCCGACAGCTACATGTTCAGTATGCTCCTAAAAGTGTCTCTGCTCATGTGAGTCCAGCTGGTGTGATTGTGGAGGGTcattcagtgactctgagctgcagcagtgaAGCAAACCCAGCAGTCAAATACAGCTGGTACAGACACACTGAAGGAGACCTGAAACTACTGCAGACTGGACCAAACCTGACCATCAACAACACCAACGCTCACAATGGCCGATACTACTGTAAAGCTGAAAACCAACACGGGACTCAAAACACGTCAGTGCTG
>TCONS_00057519
TTCAGTATCAGTCTGCCGTACAGAGTAGAAGCTCTAGAAGGATCCTGTGTTTTTATACCCTGCATATTCCAGATTGATGAAGATTATAAAGATGACCTCACTGATGCTGCAAAGGGATTATGGTATAAAGAAATATACCCTTCTGGTTTGGTGTTTAACTCCAGCAGCCCTGACAGTGGACAGTTAAAAGGAGAAATGTTTGACAAAGCTACAGAGAAAAACTGCAGCACTCGCTTCGATAATCTCAAACTCACAGACAGTGGCTCATATTACTTCAGACTTGAAAGCAACGGTGGACTAAAATGGAGCTACATAGAAGCGTCTCCACCCAATCCCACAGTGCTTCTGTTTCAGGATCAGCAGGAGGTGATGGAGGTGACGGAGGGAAAATCAGTGACTCTGAGCTGCTTTAAGATCTTCTGTCCGTCTCTTCCATCATCTCTCACATGGAGCTTCAGTCCTGAACACCTCATCAATGCAAACATCACAGAACAGCAGCATCAAAACCAAACACATTACTACTCTGATCTGATGTTCACTGTAACTCAGCATCATCACAGAGCTGAATTCACCTGCACTGCAACACAGCAGCAGATCACAACACACAGCACCCGACAGCTACATGTTCAGTGTAAGACAGGAATTACTTCAGTCACAGATGCTCCTAAAAGTGTCTCTGCTCATGTGAGTCCAGCTGGTGTGATTGTGGAGGGTcattcagtgactctgagctgcagcagtgaAGCAAACCCAGCAGTCAAATACAGCTGGTACAGACACAATGAAGGAGACCTGGAACCAGTGCAGACCGGACCAAACCTGACCATCAGCAACACAAACCTGACTGAGACAAACCTGACCTTGAGCTACTCCAACCTGACCATCAACGACATCAACCCATCACACAGTGGACGATACTACTGCAGAGCTAAAAACCAACATGGGACTCAGAACACATCAGTGCTGCTGGACGTCCACTTTCCCCCTCAAACCCCTTTTTGTCTTGGAAATGCTCCTAAAAGTGTCTCTGCTCATGTGAATGGTGCAGCAGTGGAGGGTcattcagtgactctgagctgcagcagtgaAGCAAACCCAGCAGTCAAATACAGCTGGTACAGACACACTGAAGGAGACCTGAAACCAGTGCAGACCGGACCAAACCTGACCATCATCAACATCAACCGCACACACAGTAAACGATACTACTGTAGAGCTGAAAACCAACAAGGGACTCAGAACACATCAGTGCTGCTGGACGTC
>TCONS_00057520
ATGGAGGTGACGGAGGGAAAATCAGTGACTCTGAGCTGCTTTAAGATCTTCTGTCCGTCTCTTCCATCATCTCTCACATGGAGCTTCAGTCCTGAACACCTCATCAATGCAAACATCACAGAACAGCAGCATCAAAACCAAACACATTACTACTCTGATCTGATGTTCACTGTAACTCAGCATCATCACAGAGCTGAATTCACCTGCACTGCAACACAGCAGCAGATCACAACACACAGCACCCGACAGCTACATGTTCAGTATGCTCCTAAAAGTGTCTCTGCTCATGTGAGTCCAGCTGGTGTGATTGTGGAGGGTcattcagtgactctgagctgcagcagtgaAGCAAACCCAGCAGTCAAATACAGCTGGTACAGACACAACAACACAAACCTGACTGAGACAAACCTGACCTTGAGCTACTCCAACCTGACCATCAACGACATCAACCCATCACACAGTGGACGATACTACTGCAGAGCTAAAAACCAACATGGGACTCAGAACACATCAGTGCTGCTGGACGTCCAGTATGCTCCTAAAAGTGTCTCTGCTCATGTGAGTCCAGCTGGTGTGATTGTGGAGGGTcattcagtgactctgagctgcagcagtgaAGCAAACCCAGCAGTCAAATACAGCTGGTACAGACACACTGAAGGAGACCTGAAACTACTGCAGACTGGACCAAACCTGACCATCAACAACACCAACCTGAATGAAACAAACCTGACCATCAGCAATGTCTATTTGGCTCACAATGGCCGATACTACTGTAAAGCTGAAAACCAACACGGGACTCAAAACACGTCAGTGCTGCTGGACGTCCAGCATGCTCCTAAAAGTGTCTCTGCTCATGTGAATGGTGCAGCAGTGGAGGGTcattcagtgactctgagctgcagcagtgaAGCAAACCCAGCAGTCAAATACAGCTGGTACAGACACACTGAAGGAGACCTGAAACCAGTGCAGACCGGACCAAACCTGACCATCATCAACATCAACCGCACACACAGTAAACGATACTACTGTAGAGCTGAAAACCAACAAGGGACTCAGAACACATCAGTGCTGCTGGACGTCCAGTATGCTCCTAAAAGTGTCTCTGCTCATGTGAGTCCAGCTGGTGTGTTTGTGGAGGGTcattcagtgactctgagctgcagcagtgaAGCAAACCCAGCAGTCAAATACAGCTGGTACAGAAACACCAACCTCACCTTGAGCTACTCCAACTTAACCATCAGCGACATCAACCCATCACACATTGGCCAATACTACTGTAGAGCTAAAAACCAACACGGGACTCAGAACACATCAGTGCTGCTGGACGTCCAGTATGCTCCTAAAAGTGTCTCTGCTCATGTGAGTCCAGCTGGTGTGATTGTGGAGGGTcattcagtgactctgagctgcagcagtgaAGCAAACCCAGCAGTCAAATACAGCTGGTACAGCAACACAAACCAGACTGAGATAAACCTGACTGGACCAAACCTGACCATCAGCAACATCAACCGGTCTCACAGTGGACGATACTACTGTAGAGCTGAAAACCAACACGGG
>TCONS_00053255
AATCAGTGACTCTGAGCTGCTTTAAGATCTTCTGTCCGTCTCTTCCATCATCTCTCACATGGAGCTTCAGTCCTGAACACCTCATCAATGCAAACATCACAGAACAGCAGCATCAAAACCAAACACATTACTACTCTGATCTGATGTTCACTGTAACTCAGCATCATCACAGAGCTGAATTCACCTGCACTGCAACACAGCAGCAGATCACAACACACAGCACCCGACAGCTACATGTTCAGTATGCTCCTAAAAGTGTCTCTGCTCATGTGAGTCCAGCTGGTGTGATTGTGGAGGGTcattcagtgactctgagctgcagcagtgaAGCAAACCCAGCAGTCAAATACAGCTGGTACAGACACAATGAAGGAGACCTGGAACCAGTGCAGACCGGACCAAACCTGACCATCAGCAACACAAACCTGACTGAGACAAACCTGACCTTGAGCTACTCCAACCTGACCATCAACGACATCAACCCATCACACAGTGGACGATACTACTGCAGAGCTAAAAACCAACATGGGACTCAGAACACATCAGTGCTGCTGGACGTCCAGT
>TCONS_00057521
CTAAAAGTAAAACAATTGTGCTTATACACTATTGTCAAAAAATTATTGTgTGTTTTATGTGGCTTCAGTATCAGTCTGCCGGAAAGAGTAGAAGCTCTAGAAGGATCCTGTGTTTATATACCCTGCATATTCGAGATTGATCAAACATATAATGCTCACCTCACTGATTCTGCAAAGAGATTATGGTATAAGGAAGGAATATCAAAAGAAGATCATCATGTAGTTGTGTTTGACTCCAGCATCTCAGGCAGTGGACACTTTAAAGGAGAAATATTTGGTAAACCTACAGAGAAAAACTGCAGCACTCGCTTCGATAATCTCAAACTAAGTCACAGAGGCTCATATTACTTCAGACTTGAAGGCAGCGGTGGACTGATATATAGCTACACAAAATACCCATACCATCACCCACGAGTTGAAATTGTCGATCAGCAGGAGGTGATGGAGGTGACGGAGGGAAAATCAGTGACTCTGAGATGCTTTAAGATCTTCTGTCCGTCTCTTCCATCATCTCTCACATGGAGCTCCAGTCCTGAACACCTCATCAATGCAAACATCACACAACAGCAGCATCAAAGCCAAACACATTACTACTCTGATCTGATGTTCACTGTAACTCATCATCACCACAGAGCTGAATTCACCTGCACTGCAACACAGCAGCAGATCACAACACACAGCACCCGACAGCTACATGTTCAGTATGCTCCTAAAAGTGTCTCTGCTCATGTGAATGGTGCAGCAGTGGAGGGTcattcagtgactctgagctgcagcagtgaAGCAAACCCAGCAGTCAAATACAGCTGGTACAGACACACTGAAGGAGACCTGAAACCAGTGCAGACCGGACCAAACCTGACCATCATCAACATCAACCGCACACACAGTAAACGATACTACTGTAGAGCTGAAAACCAACAAGGGACTCAGAACACATCAGTGCTGCTGGACGTCCAGTATCCTCCAGAAAAACCACATATTCTTACAAACAGTGTGATTGTGGAGGGTcattcagtgactctgagctgcagcagtgaAGCAAACCCAGCAGCGAACTACAGCTGGTACAGACACAAGGCAAACCTGAGATTGAGCTACTTCAATCTGACCGGACCAAACCTGACCATCAGCAACATCAACCGGTCTCACAGTGGACGATATTACTGCAGAGCTGAAAACCAACACGGGACTCAGAACACATCAGTGCTGCTGGACGTCCAG
>TCONS_00053256
AATCAGTGACTCTGAGATGCTTTAAGATCTTCTGTCCGTCTCTTCCATCATCTCTCACATGGAGCTCCAGTCCTGAACACCTCATCAATGCAAACATCACACAACAGCAGCATCAAAGCCAAACACATTACTACTCTGATCTGATGTTCACTGTAACTCATCATCACCACAGAGCTGAATTCACCTGCACTGCAACACAGCAGCAGATCACAACACACAGCACCCGACAGCTACATGTTCAGTATGCTCCTAAAAGTGTCTCTGCTCATGTGAGTCCAGCTGGTGTGATTGTGGAGGGTcattcagtgactctgagctgcagcagtgaAGCAAACCCAGCAGTCAAATACAGCTGGTACAGACACACTGAAGAAAACCTGAAACCACTGCAGACTGGACCAAAcctgactggaccaaatctgacCATCAAAAACCTGATCAAAACAAATCTGACAGAAACAAACCTTTCCATTAGCAACACAAACCAGACTGAGATAAACCTGACTGGACCAAACCTGACCATCAGCAACATCAACCGGTCTCACAGTGGACGATACTACTGTAGAGCTGAAAACCAACACGGGACTCAGAACACATCAGTGCTGCTGGACGTCCAGTTTCCACCCAAAATCTCCAGCTTTTGTAGCCGAAACAACACACTCAGATGCGTCTGTAAGGTTGAAGGGAATCCTCTGCCTAAACTACAGTGGCGTCTGTCTGGAAAAGTTCTCAATTCCACTAACGAAATGAAGATAAGTGAGCAAACTGTAGGAAAAATGAGTTTAGAGAGCATCCTGACCATCCGTCAGTCTCTCTCAGACTCATCAGTCCTGCAGTGTTGGACTGCAAACGCTCACGGATCCGCCAGCCACCAGTTTCAGCACATCACAACATTACCAGACACAGGTCTTCATACTGGATGTGTGCTGCTGGGATTCGCCATCGGAGCATCGCTCATCCTGATCTTCTGTGTTCTGACCGTCTGCAACCAACGAAAAAAGTATAGAAAACTTGCCGAAAGCACTCGAGACGACACATCTGGACTCATTCTGACGCAAAG
>TCONS_00057522
CTGCCGGAGAGAGTAGAAGCTCTAGAAGGATCCTGTGTTTTTATACCCTGCATATTCGAGATTGATCAAACATATAATGCTTACCTCACTGATACTGTAAAGAGATTATGGTATAAGGAAGGAATATCAAAAGATAGTAATGTAGTTGTGTTTGACTCCAGCATCTCAGGCAGTGGACACTTAAAAGGAGAAATATTTGGCAAACCTACAGAGAAAAGGTGCAGCATTCGCTTCGATAATGTCAGTGTGAGTGACAATGGCTCATATTACTTCAGACTTGAAGGCAACGGTGAACTGAAATATAGTTACACAAAACTCCCAAACCATCACCCACAAGTTGAAATTGTCGATCAGCAGGAGGTGATGGAGGTGACGGAGGGAAAATCAGTGACTCTGAGCTGCTTTAAGATCTTCTGTCCGTCTCTTCCATCATCTCTCACATGGAGCTTCAGTCCTGAACACCTCATCAATGCAAACATAACAGAACAGCAGCATCAAAACCAAACACATTACTACTCTGACCTGATGTTCACTGTAACTCAGCATCATCACAGAGCTGAATTCACCTGCACTTCAACACAGCAGCAGATCACAACACACAGCACCCGACAGCTACATGTTCAGTATGCTCCTAAAAGTGTCTCTGCTCATGTGAGTCCAGCTGGTGTGATTGTGGAGGGTcattcagtgactctgagctgcagcagtgaAGCAAACCCAGCAGTCAAATACAGCTGGTACAGACACACCAACACAAACCTGACCGAGATAAACCTGACTGGACCAAACCTGACCATCAGCAACATCAACCGGTCTCACAGTGGACGATACTACTGTAGAGCTGAAAACCAACACGGGTCTCAGAACACATCAGTGCTGCTGGACGTCCAGTATCCTCCAGAAAAACCACATATTCATACAAACAGTGTAGCAGTGGAGGGTcattcagtgactctgagctgcagcagtgaAGCAAACCCAGCAGTGAACTACAGCTGGTACAGACACACTGAAGTGTTGTTGTCTGTAATATATTCTTCACTGAAAACCATAATAATACACAACATTAACCGGTCTCACAGTGGACGATACTACTGTAGAGCTGAAAACCAACACGGGACTCAGAACACATCAGTGCTGCTGGACGTCCACTATCATCAAGTACTCACACTGGACAGCCtgcagattagCCGAAACAACACACTCAGATGCGTCTGTAAGGTTGAAGGGAATCCTCTGCCTAAACTACAGTGGCGTCTGTCTGGAAAAGTTCTCAATTCCACTAACGAAATGAAGATAAGTGAGCAAACTGTAGGAAAAATGAGTTTAGAGAGCATCCTGACCATCCGTCAGTCTCTCTCAGACTCATCAGTCCTGCAGTGTTGGACTGCAAACGCTCACGGATCCGCCAGC
>TCONS_00057111
CCTGCACTTCAACACAGCAGCAGATCACAACACACAGCACCCGACAGCTACATGTTCAGTGTAAGACAGGAATTACTTCAGTCACAGATGATCTATAAATAATGCTGTCAATTACACTGTAATGATCAAAGTTCTCTTCATCAGATGCTCCTAAAAGTGTCTCTGCTCATGTGAGTCCAGCTGGTGTGATTGTGGAGGGTcattcagtgactctgagctgcagcagtgaAGCAAACCCAGCAGTCAAATACAGCTGGTACAGACACACTGAAGGAGATCTGAAACAACTGCAGACCGAACCAAACCTGACTGAACCAAATCTGGCCATTAGCAACACAAACCTGACCGAGATAAACCTGACTGGACCAAACCTGACCATCAGCAACATCAACCGGTCTCACAGTGGACGATACTACTGTAGAGCTGAAAACCAACACGGGTCTCAGAACACATCAGTGCTGCTGGACGTCCAGTATCCTCCAGAAAAACCACATATTCATACAAACAGTGTAGCAGTGGAGGGTcattcagtgactctgagctgcagcagtgaAGCAAACCCAGCAGTGAACTACAGCTGGTACAGACACACTGAAGGAGACCTGAAACCAGTGCAGACCGAACCAAACCTGACCATCAACACCACAAACCTGACTGAAGCAAATCTGATCATCAACAACACCAGTTTGACCGAGGCAAACCTGACATTGAGCTATTATGATGTGACCGGACCAAACCTGACCATCAAGAACATCAACCGGTCTCACAGTGGAAGATACTACTGTAAAGCTCAAAACCAACACGGCGTTCAGAACACATCAATGCTGCTGGACGTCCAGTATGCTCCTAAAAGTGTCTCTGCTCATGTGAGTCCAGCTGGTGTGATTGTGGAGGGTcattcagtgactctgagctgcagcagtgaAGCAAACCCAGCAGCGAACCACAGCTGGTACAGACACATTGAAGGAGACCTGGAACCACTGCAGACCAGACCAAACCTGACGCTCCGAAATACAAACCTGACTGGACCAAACCTGACCATCAGCAACATTAACCGGTCTCACAGTGGACGATACTACTGTAGAGCTGAAAACCAACACGGGACTCAGAACACATCAGTGCTGCTGGACGTCCACTGTAAG
>TCONS_00053257
tgcagcagtgaAGCAAACCCAGCAGCGAACCACAGCTGGTACAGACACATTGAAGGAGACCTGGAACCACTGCAGACCAGACCAAACCTGACGCTCCGAAATACAAACCTGACTGGACCAAACCTGACCATCAGCAACATTAACCGGTCTCACAGTGGACGATACTACTGTAGAGCTGAAAACCAACACGGGACTCAGAACACATCAGTGCTGCTGGACGTCCACTTTCCACCCAAAATCTCCAGCTTTTGTAGCCGAAACAACACACTCAGATGCGTCTGTAAGGTTGAAGGGAATCCTCTGCCTAAACTACAGTGGCGTCTGTCTGGAAAAGTTCTCAATTCCACTAACGAAATGAAGATAAGTGAGCAAACTGTAGGAAAAATGAGTTTAGAGAGCATCCTGACCATCCGTCAGTCTCTCTCAGACTCATCAGTCCTGCAGTGTTGGACTGCAAACGCTCACGGATCCGCCAGCCACCAGTTTCAGCACATCACAACATTACCAGACACAGGTCTTCATACTGGATGTGTGCTGCTGGGATTCGCCATCGGAGCATCGCTCATCCTG

Function

GO:

id name namespace
GO:0042737 drug catabolic process biological_process
GO:0046395 carboxylic acid catabolic process biological_process
GO:0044282 small molecule catabolic process biological_process
GO:0006508 proteolysis biological_process
GO:0016054 organic acid catabolic process biological_process
GO:0044421 obsolete extracellular region part cellular_component
GO:0005576 extracellular region cellular_component
GO:0005615 extracellular space cellular_component
GO:0004175 endopeptidase activity molecular_function
GO:0004252 serine-type endopeptidase activity molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0008233 peptidase activity molecular_function
GO:0008236 serine-type peptidase activity molecular_function
GO:0140096 catalytic activity, acting on a protein molecular_function
GO:0017171 serine hydrolase activity molecular_function
GO:0003824 catalytic activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDARG00000059196 ENSDARG00000093685

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00057110 False 951 lncRNA 0.45 5 1950010 1952722
TCONS_00057519 False 1263 lncRNA 0.47 5 1950078 1958820
TCONS_00057520 False 1572 lncRNA 0.49 9 1950830 1959986
TCONS_00053255 False 564 processed_transcript 0.48 2 1950849 1951496
TCONS_00057521 False 1224 lncRNA 0.45 6 1957057 1960605
TCONS_00053256 False 1060 processed_transcript 0.47 5 1958240 1974894
TCONS_00057522 False 1413 lncRNA 0.45 9 1965439 1972711
TCONS_00057111 False 1145 lncRNA 0.48 3 1966409 1967986
TCONS_00053257 True 570 processed_transcript 0.50 3 1967756 1974208

Neighbor

gene id symbol gene type direction distance location
XLOC_026985 NA coding upstream 83560 1865560 ~ 1866450 (+)
XLOC_026984 NA coding upstream 87498 1857483 ~ 1862512 (+)
XLOC_026983 NA coding upstream 97356 1845630 ~ 1852654 (+)
XLOC_026982 NA coding upstream 104854 1842969 ~ 1845156 (+)
XLOC_026981 NA coding upstream 122905 1825603 ~ 1827105 (+)
XLOC_026988 NA coding downstream 8769 1983663 ~ 1986858 (+)
XLOC_026989 yeats4 coding downstream 84798 2059692 ~ 2062435 (+)
XLOC_026990 frs2a coding downstream 117789 2092683 ~ 2099581 (+)
XLOC_026991 cmah coding downstream 253860 2228754 ~ 2250264 (+)
XLOC_026992 glipr1a coding downstream 277229 2252123 ~ 2258796 (+)
XLOC_026994 NA non-coding downstream 370754 2345648 ~ 2349381 (+)
XLOC_026995 NA non-coding downstream 377878 2352772 ~ 2355189 (+)
XLOC_026997 BX072538.1 non-coding downstream 607022 2581916 ~ 2582031 (+)
XLOC_026998 NA non-coding downstream 613263 2588157 ~ 2588403 (+)

Expression


Co-expression Network