XLOC_026989 (yeats4)


Basic Information

Item Value
gene id XLOC_026989
gene name yeats4
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 2059692 ~ 2062435 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00053258
ATTTTAAAAGGGTTACTCCAAGCGTCTGCTCTCGCTCATATGAGCGCTACATACATCTTTCTCTATTGATTGACGAACACATATTTCATACTTAATGGCAGATCTATACTGTAATTCCGTTCAGTTCAAAACTGATTCACAGAAACCAGTATATAACTTTTGATTGCCTGTATACTATGTTTAAGAAGATGGCTGAATTTGGTCCAGATTCGGGGGGACGGGTGAAGGGAGTGACTATCGTGAAACCTATTGTGTTTGGAAACGTCGCACGTTATTTTGGCAAAAAGAGAGAAGACGACGGACACACTCATCAATGGACAGTTTATGTGAAGCCTTACAGAAACGAGGACATGTCTGCTTATGTCAAAAAAATACAGTTCAAACTGCATGAAAGTTATGGAAATCCTTTAAGAGTGGTTACAAAGCCTCCGTATGAGATTACAGAGACGGGATGGGGAGAGTTTGAGATCATCATTAAGATCTTCTTCATCGATCCAAACGAGAGACCAGTCACTCTGTATCATCTGCTGAAGCTCTTCCAGTCAGACTCCAGTGCCATGCCCAAGAAGACGGTCGTGTCCGAGTTCTACGATGAGATGATATTCCAAGACCCGACGGCCATGATGCAGCAGCTCCTGAACACCACCAGACAGCTGACGCTTGGCGCTTACAAACACGAGACCGAGTTTGCAGAGCTGGAGTTACGAACTCGAGAAAAGCTGGAATCAGCAAAGAAAAAGACGAGTCTGGAGATCACGGAGCTGAAGGAGAGACTGAAGGCCTCCAGAGAAAACATCAACTTTCTGAAGGGGGAGATCCGCAGACTGGAGGAGGACGACCAGATGAAGGAGCACTGAGGACAGCATCTGCTGCAGCCTTTAAAGgactcatttatttacttgtttattttgcatttgataCATATACATTACTGTTGTCCATACATTCATTACTGATGTTCAGTTTTCCTGTCCAGCTCAATACAGCAACATGCGTGACTGCTTTTTGAAATTTTGTAGCTCTCGCTGAGTGGTTTTTGtatgaataaaactttttttagttGGAA

Function

symbol description
yeats4 Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be located in nucleus. Orthologous to human YEATS4 (YEATS domain containing 4).

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component

KEGG:

id description
ko03036 Chromosome and associated proteins

ZFIN:

id description
ZDB-GENE-040718-252 Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be located in nucleus. Orthologous to human YEATS4 (YEATS domain containing 4).

Ensembl:

ensembl_id ENSDARG00000045874

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00053258 True 1066 mRNA 0.43 7 2059692 2062435

Neighbor

gene id symbol gene type direction distance location
XLOC_026988 NA coding upstream 72834 1983663 ~ 1986858 (+)
XLOC_026987 NA coding upstream 84798 1950010 ~ 1974894 (+)
XLOC_026986 NA coding upstream 106693 1936477 ~ 1952999 (+)
XLOC_026985 NA coding upstream 193242 1865560 ~ 1866450 (+)
XLOC_026984 NA coding upstream 197180 1857483 ~ 1862512 (+)
XLOC_026990 frs2a coding downstream 30248 2092683 ~ 2099581 (+)
XLOC_026991 cmah coding downstream 166319 2228754 ~ 2250264 (+)
XLOC_026992 glipr1a coding downstream 189688 2252123 ~ 2258796 (+)
XLOC_026993 si:ch73-89b15.3 coding downstream 205206 2267641 ~ 2290268 (+)
XLOC_026994 NA coding downstream 283213 2345648 ~ 2349381 (+)
XLOC_026995 NA non-coding downstream 290337 2352772 ~ 2355189 (+)
XLOC_026997 BX072538.1 non-coding downstream 519481 2581916 ~ 2582031 (+)
XLOC_026998 NA non-coding downstream 525722 2588157 ~ 2588403 (+)
XLOC_027002 NA non-coding downstream 839912 2902347 ~ 2904041 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000066_02124655_02126692 YEATS4 coding CI01000066 null 2124655 ~ 2126863 (+)