XLOC_026991 (cmah)


Basic Information

Item Value
gene id XLOC_026991
gene name cmah
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 2228754 ~ 2250264 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00053260
ATACTCCACAGACTGCACTGCACACTAcgGCCACTGCAGCAGGATGGCAGCTCAGGTCTCGCACACAGTGCTGCGGTTGGAGGCTGAAGATGTTCGAAACCTCAAAGACGGAATTAATTTTCAGAAAAACAACAAGGATGGAAAATGTTACATCATTTACAAAGCAAACGGCGAGCTGCGGGCGTGCAGGAACCAGTGCAAACACCAGGGAGGACTGTTCATTAAAGACATCGAGGACATGGACGGCAGAACAGTTCGGTGTACCAAACACTACTGGAAACTCAACGTGGCCACTATGCAGTACGTCAATCCACCAGACAGCTTCATGCAGGATGAACTCGAAGCAGTGCTGTCTGAGACTGACGGGAGTTTAGAGCTGCTGGAGTTGAATCCTCCAGACCCCTGGACTGCAGAGCCCAGAGAAGCACAAGATCTGCAAGCCGGAGAGATTACGCTGACCTACATCACTCATGCGTGTATGGAGCTGAAAGCGGGCGAGCGCAGGATGATGTTTGACCCGTGGCTCACAGGACCAGCATTTGCCAGAGGATGGTGGCTCCTACACGAGCCTCCGAAAGATGCTATGGACAGACTGATGGAGGCAGATCTCGTTTACATCAGCCACATGCATTCAGACCACCTCAGCTATCCGACTTTGCAACATCTCTCCAAGAAGCGTCCGGATATTCCCATTTATGTTGGAAACACTTCACGTCCGGTTTTCTGGTATCTGGAGAAAAGCGGAGTGAATTTAACAAACATCAACGTTGTGCCGTTCGGTGTGTGGCAGAATGTGGATGATCATCTGAGGTTCATGATCCTGATGGATGGCGTTCATCCTGAAATGGACACCTGCTTAATAGTGGAATATAAAGGTCACATGATCCTGAATACAGTCGACTGCACCAGACCAAACAATGGCCGTCTTCCTCATGGTGTGGATGTGATGATGAGTGACTTCGCAGGCGGCGCCTCTGGATTTCCCATGACCTTCCATGGTGGAAAATACACCGAGAGCTGGAAGGCGAATTTTATCAAGAACGAGAGGAAGAAGCTGTTGAACTACAAGGCGCAGCTGGTCAAATCTCTGCAGCCGAAGATCTACTGTCCGTTTGCTGGATATTTCACTGAAGCTCACCCGTCTGACAGGTACATAAAGGAGACAAACACGAAGAACAGTCCAGCAGAGCTGAACGAACTGATAAGGAAAAGCTGCCTGAACACTTTAACCTGGACTCCTCTACCTGGATCTGTCCTGGATTTAGCTGTGGCTCTGAATAACCGATCCAATGAAACTGCCATCACTGATCCGCCTCATGGCACAAAGATCTACAAGGACAACTGGGAGTTTGACCTGTATTTGAATCAATTGAACGCCTCCATTTCAGCTGAAATCTTCAAACACAAGCACTGGATCCAGTATTATTATAACTGGGCAGGATTCAGAAACTACAATCTGGTCATCCGGGTCATTGAGACGGATGACGATTTCCAGCCCCTGAATGGAGGTTTTGATTATCTGGTGGATTTCCTGGATCTTTCATTCCCCACGGAGCGACCAGAGAGAGAACATGCATACGAGGAGATCAAGAACCGTGTGAATGTGATGAGGCATGTGGTTGTGAATGGACTGCTGTGGGACGATCTGTACATCGGCTTCAACAACAGAATGAGCCGAGACCCTGATGTTTACCATCACAAgttctGGAATCACTTTCAGACTGAATTACCCCTTTCGGCTCCAGATTGGCAACATTTCCTTCAAATCTGCAGCCAAACACAGGAGAATGGGAGCAGTAATGGATGCAGCGTCTCTTAACACTCAGACGTGCTCTTTGATTTGTCTTATTTTTATACCTTCGGACATTGATCACTACTGCCTTAAAGGGACGTTTCACCCAAAAAAATATCTGCACAGGTTTTGTTATGATAATGATGTTGAATGATTGCTTGTTTGCACTGGTTGTGATCTTTCTGAACTTTTATACCAGATTAAATCTAATTTATCACTGTCATGTTGTTAATTGATTATGGACGAAAGGTGTTTTTGTCCAATGTTTCATCCCAGTTCAATTACtatgaactctccctttaagaaTCACTGTAATTAGATTATTTATAAAGAAACTCTTCAGCACTTTTCAATAAAATCATTTCTAAAAACCTGA
>TCONS_00053261
GGCCACTGCAGCAGGATGGCAGCTCAGGTCTCGCACACAGTGCTGCGGTTGGAGGCTGAAGATGTTCGAAACCTCAAAGACGGAATTAATTTTCAGAAAAACAACAAGGATGGAAAATGTTACATCATTTACAAAGCAAACGGCGAGCTGCGGGCGTGCAGGAACCAGTGCAAACACCAGGGAGGACTGTTCATTAAAGACATCGAGGACATGGACGGCAGAACAGTTCGGTGTACCAAACACTACTGGAAACTCAACGTGGCCACTATGCAGTACGTCAATCCACCAGACAGCTTCATGCAGGATGAACTCGAAGCAGTGCTGTCTGAGACTGACGGGAGTTTAGAGCTGCTGGAGTTGAATCCTCCAGACCCCTGGACTGCAGAGCCCAGAGAAGCACAAGATCTGCAAGCCGGAGAGATTACGCTGACCTACATCACTCATGCGTGTATGGAGCTGAAAGCGGGCGAGCGCAGGATGATGTTTGACCCGTGGCTCACAGGACCAGCATTTGCCAGAGGATGGTGGCTCCTACACGAGCCTCCGAAAGATGCTATGGACAGACTGATGGAGGCAGATCTCGTTTACATCAGCCACATGCATTCAGACCACCTCAGCTATCCGACTTTGCAACATCTCTCCAAGAAGCGTCCGGATATTCCCATTTATGTTGGAAACACTTCACGTCCGGTTTTCTGGTATCTGGAGAAAAGCGGAGTGAATTTAACAAACATCAACGTTGTGCCGTTCGGTGTGTGGCAGAATGTGGATGATCATCTGAGGTTCATGATCCTGATGGATGGCGTTCATCCTGAAATGGACACCTGCTTAATAGTGGAATATAAAGGTCACATGATCCTGAATACAGTCGACTGCACCAGACCAAACAATGGCCGTCTTCCTCATGGTGTGGATGTGATGATGAGTGACTTCGCAGGCGGCGCCTCTGGATTTCCCATGACCTTCCATGGTGGAAAATACACCGAGAGCTGGAAGGCGAATTTTATCAAGAACGAGAGGAAGAAGCTGTTGAACTACAAGGCGCAGCTGGTCAAATCTCTGCAGCCGAAGATCTACTGTCCGTTTGCTGGATATTTCACTGAAGCTCACCCGTCTGACAGGTACATAAAGGAGACAAACACGAAGAACAGTCCAGCAGAGCTGAACGAACTGATAAGGAAAAGCTGCCTGAACACTTTAACCTGGACTCCTCTACCTGGATCTGTCCTGGATTTAGCTGTGGCTCTGAATAACCGATCCAATGAAACTGCCATCACTGATCCGCCTCATGGCACAAAGATCTACAAGGACAACTGGGAGTTTGACCTGTATTTGAATCAATTGAACGCCTCCATTTCAGCTGAAATCTTCAAACACAAGCACTGGATCCAGTATTATTATAACTGGGCAGGATTCAGAAACTACAATCTGGTCATCCGGGTCATTGAGACGGATGACGATTTCCAGCCCCTGAATGGAGGTTTTGATTATCTGGTGGATTTCCTGGATCTTTCATTCCCCACGGAGCGACCAGAGAGAGAACATGCATACGAGGAGATCAAGAACCGTGTGAATGTGATGAGGCATGTGGTTGTGAATGGACTGCTGTGGGACGATCTGTACATCGGCTTCAACAACAGAATGAGCCGAGACCCTGATGTTTACCATCACAAgttctGGAATCACTTTCAGACTGAATTACCCCTTTCGGCTCCAGATTGGCAACATTTCCTTCAAATCTGCAGCCAAACACAGGAGAATGGGAGCAGTAATGGATGCAGCGTCTCTTAACACTCAGACGTGCTCTTTGATTTGTCTTATTTTTATACCTTCGGACATTGATCACTACTGCCTTAAAGGGACGTTTCACCCAAAAAAATATCTGCACAGGTTTTGTTATGATAATGATGTTGAATGATTGCTTGTTTGCACTGGTTGTGATCTTTCTGAACTTTTATACCAGATTAAATCTAATTTATCACTGTCATGTTGTTAATTGATTATGGACGAAAGGTGTTTTTGTCCAATGTTTCATCCCAGTTCAATTACtatgaactctccctttaagaaTCACTGTAATTAGATTATTTATAAAGAAACTCTTCAGCACTTTTCAATAAAATCATTTCT

Function

symbol description
cmah Predicted to enable 2 iron, 2 sulfur cluster binding activity; CMP-N-acetylneuraminate monooxygenase activity; and metal ion binding activity. Predicted to be involved in N-acetylneuraminate metabolic process. Predicted to be located in cytoplasm. Is expressed in several structures, including gill; heart; integument; liver; and pleuroperitoneal region. Orthologous to human CMAHP (cytidine monophospho-N-acetylneuraminic acid hydroxylase, pseudogene).

GO:

id name namespace
GO:0006054 N-acetylneuraminate metabolic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0005737 cytoplasm cellular_component
GO:0046872 metal ion binding molecular_function
GO:0016491 oxidoreductase activity molecular_function
GO:0051536 iron-sulfur cluster binding molecular_function
GO:0051537 2 iron, 2 sulfur cluster binding molecular_function
GO:0030338 CMP-N-acetylneuraminate monooxygenase activity molecular_function

KEGG:

id description
ko00520 Amino sugar and nucleotide sugar metabolism

ZFIN:

id description
ZDB-GENE-040704-33 Predicted to enable 2 iron, 2 sulfur cluster binding activity; CMP-N-acetylneuraminate monooxygenase activity; and metal ion binding activity. Predicted to be involved in N-acetylneuraminate metabolic process. Predicted to be located in cytoplasm. Is expressed in several structures, including gill; heart; integument; liver; and pleuroperitoneal region. Orthologous to human CMAHP (cytidine monophospho-N-acetylneuraminic acid hydroxylase, pseudogene).

Ensembl:

ensembl_id ENSDARG00000057714

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00053260 False 2168 mRNA 0.46 15 2228754 2250264
TCONS_00053261 True 2130 mRNA 0.46 14 2230701 2250254

Neighbor

gene id symbol gene type direction distance location
XLOC_026990 frs2a coding upstream 129173 2092683 ~ 2099581 (+)
XLOC_026989 yeats4 coding upstream 166319 2059692 ~ 2062435 (+)
XLOC_026988 NA coding upstream 241896 1983663 ~ 1986858 (+)
XLOC_026987 NA coding upstream 253860 1950010 ~ 1974894 (+)
XLOC_026986 NA coding upstream 275755 1936477 ~ 1952999 (+)
XLOC_026992 glipr1a coding downstream 1859 2252123 ~ 2258796 (+)
XLOC_026993 si:ch73-89b15.3 coding downstream 17377 2267641 ~ 2290268 (+)
XLOC_026994 NA coding downstream 95384 2345648 ~ 2349381 (+)
XLOC_026995 NA coding downstream 102508 2352772 ~ 2355189 (+)
XLOC_026996 zdhhc17 coding downstream 231782 2482046 ~ 2508577 (+)
XLOC_026985 NA non-coding upstream 362304 1865560 ~ 1866450 (+)
XLOC_026984 NA non-coding upstream 366242 1857483 ~ 1862512 (+)
XLOC_026997 BX072538.1 non-coding downstream 331652 2581916 ~ 2582031 (+)
XLOC_026998 NA non-coding downstream 337893 2588157 ~ 2588403 (+)
XLOC_027002 NA non-coding downstream 652083 2902347 ~ 2904041 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G271097 NA unknown CI01000066 null 2269169 ~ 2279560 (+)