G778849 (LOC106608711)


Basic Information

Item Value
gene id G778849
gene name LOC106608711
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 19398221 ~ 19442473 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU887434
TTATTAATAAAAATACATACTACTGTGAAATGTCATATTTTCTGCTTCAAAATGAAGTAGGCCAGAGAGGGATGTGGTAAAAGAAGGGCGAGCTTTCACCATTCTTTTGATCTGTAACTATTATTAATGTTACTATTATTATGAAGACTTTTACTGTACCTGCACAGTGTTCACATCGTGACCTCTTCATTATCACACAGAGGATAATGTTGACAATCACACTCAGAATCACAGCAGTTGTCAGGCCAGATATAAATACGAAGAAAACAAGATTACTCTTATCACCCAACAGGTCTGAAACTTAAAAAGCAAGGCTTAATTATTTTctattcttttttttctctcaatgcATTTGGCATGAACGTTAGCTAATAAAGTTAAATAATTTGAAATCCACTATCAACTAAAGGTGAAAGATTTACATATTGATATTGATGTAGTAGTGCCGTATTTTGGTTATGCACAACTTACCTTCAACATCCAGCTTGGTCCCGTTCCCAAACAGTATCTCCCCACatgaggccacagcacagtagtaAGTCCCAGCATCAGAGAGGCTGAGGTTCCTCTTGGGGAGGTTGTAGACACAACTCTGTGTAGGAGACCCAGCCTCAGGAGGACAAGCCTCTGGACTTTTCTCACACCAATCACTCTTGTCTCTAAGGGTGTAAATGATTCCTGGACGGGATTCTCCTGAGCCTTGTCTAAACCAATAGACACTGTACTCTCCTGCACAGGTCTCAGTGTGTATTGTACAGTTCAGAGTCACAGATTCTCCTAGCTGAACTGACTCAGACAAAGGCTGCTGAAGCACAGACATGCTGTTGGACCCTGAATCTGAAGAGAGTGAGTAAGATCATGGTGTGTACATTCCATTTTTTTGCTAGATTCATTAATTTAGCATTATATGAACACACATTAGGAAGCAATTTAAGTTACCTTTGACAATTAAAAATGTTCCTTCTCCAAATGTGACTTGGCCCGCTTCCATAGCACCACAGTAGTATATAGCTGAGTCCCCTGACTCTGTCTTTGAGATGGTCAAGTTAAAGCTGTCAACTCCTCTCTTCACACTTAAACGTTTAGTCTCATTAAAGTCCTTGGTAAAATGCAAACTATGTTTAGAGAGATAATATGATGATGCCATGAGAAGAGGCTTCTGTCCAACAGATTGCTTGAACCAAGAGACTCTGATCAGCAAATCAAGTTGACAAAAGCATGTGAGAGTTACACTTTGTCCCAGGCGTGTAACTATCACAGGGTCTGTTTGGATTACATCCTTGTTAAGTGCACAACC

Function

NR:

description
uncharacterized protein LOC110532962, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU887434 True 1297 lncRNA 0.40 2 19398221 19442473

Neighbor

gene id symbol gene type direction distance location
LOC110532957 LOC106577671 coding downstream 73489 19323732 ~ 19324732 (-)
LOC118966014 LOC106577677 coding downstream 87251 19310059 ~ 19310970 (-)
LOC110532955 NA coding downstream 104725 19292757 ~ 19293496 (-)
LOC110531676 nitr3 coding downstream 105864 19290034 ~ 19292357 (-)
LOC110532954 LOC106577681 coding downstream 137137 19259903 ~ 19261084 (-)
LOC110531695 LOC106577660 coding upstream 420310 19862783 ~ 19868337 (-)
LOC110531696 LOC106577660 coding upstream 426965 19869438 ~ 19872456 (-)
LOC110531700 LOC106577652 coding upstream 507374 19949847 ~ 19961244 (-)
LOC110531702 LOC106577654 coding upstream 524496 19966969 ~ 19972714 (-)
LOC110531704 LOC106608762 coding upstream 579721 20022194 ~ 20075490 (-)
G778787 NA non-coding downstream 120003 19277319 ~ 19278218 (-)
LOC110531685 LOC106577724 non-coding downstream 150040 19247704 ~ 19249648 (-)
LOC110531677 LOC106577725 non-coding downstream 195577 19201953 ~ 19204332 (-)
LOC110531690 NA non-coding downstream 200951 19196202 ~ 19197333 (-)
G778697 NA non-coding downstream 285294 19112661 ~ 19112927 (-)
G779050 NA non-coding upstream 149379 19591852 ~ 19592172 (-)
G779053 NA non-coding upstream 152565 19595038 ~ 19595451 (-)
G779055 NA non-coding upstream 152980 19595453 ~ 19595782 (-)
G780086 NA non-coding upstream 167083 19609556 ~ 19610795 (-)
G780096 NA non-coding upstream 180412 19622885 ~ 19628052 (-)
G778216 NA other downstream 1040118 18355441 ~ 18358103 (-)
G776822 NA other downstream 1737738 17659690 ~ 17660483 (-)
G776820 NA other downstream 1738818 17659016 ~ 17659403 (-)
G776814 LOC106600668 other downstream 1741896 17655988 ~ 17656325 (-)
G776812 LOC106566110 other downstream 1742241 17655594 ~ 17655980 (-)
G780209 NA other upstream 375218 19817691 ~ 19824571 (-)
LOC110531717 LOC106577635 other upstream 859605 20302051 ~ 20324316 (-)
LOC110531730 adgrl3 other upstream 1488487 20930960 ~ 21272646 (-)
G782003 NA other upstream 2333245 21775718 ~ 21776210 (-)

Expression


Co-expression Network