XLOC_026992 (glipr1a)


Basic Information

Item Value
gene id XLOC_026992
gene name glipr1a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 2252123 ~ 2258796 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00053262
AGCGAGTGCCAGATGTGTCAGAAATGAGTTCATGTTTTCAGCTGTTGATCTCTGCCTGCTTTCTGCTGGGTGTTTTCTCCAGCGAGTATCTATTCGACATCACAGATCGGGCATTTATCGATGAATGTGTGCGAGAACACAACCAGAACCGCAGCAGCGTTTCACCCACCGCAGCTAACATGCGATACATGacgtGGGACGCAGCGCTGGCAGTGACGGCGCGGGCCTGGGCTAGATTCTGCCTCTTCAAACACAACATTCACCTGCGGGAGGCAAAGCGGGTTCATCCCACATTCACCACAGTGGGAGAAAACATCTGGGCCGGAGCGCCGTACAGCAGATTCACTGTCAAATCAGCAGTGTTTTCATGGGTCAACGAGCTTAAAgattacaactacaacaacaatcAGTGCAATGACAAGAAAGTCTGCGGACACTACACTCAGGTTGTTTGGGCAGATTCCTATAAGGTTGGCTGTGCGGTTCAGACCTGTCCAAATGGTGTGGCCGAAACACACTTCTCTAATATACAAGGAGTGATATTTGTGTGCAACTACGCAACTGCAGGAAATTTCGCTGGTAGGTCTCCATACAAACAGGGCGCTTCATGCAGCGGCTGCGGCGGCTCAGACAAGTGTGAACGAAATCTCTGTCGAAACACCGACCGAGATGCAGAGCAGAgttaCAACTGGACTCCAGACTGGGATCCTGCTCTCTCCTCATGCGGGACCTTCTGTGTGTCGGTGATGATTATTAGGCTCATTTCAGTGGTGTTGCTGTTTGTTTGTGTTCACTTCCTGCAGTGCCGTTACAGCCCTTTTATATACG
>TCONS_00053263
ATGAGTTCATGTTTTCAGCTGTTGATCTCTGCCTGCTTTCTGCTGGGTGTTTTCTCCAGCGAGTATCTATTCGACATCACAGATCGGGCATTTATCGATGAATGTGTGCGAGAACACAACCAGAACCGCAGCAGCGTTTCACCCACCGCAGCTAACATGCGATACATGacgtGGGACGCAGCGCTGGCAGTGACGGCGCGGGCCTGGGCTAGATTCTGCCTCTTCAAACACAACATTCACCTGCGGGAGGCAAAGCGGGTTCATCCCACATTCACCACAGTGGGAGAAAACATCTGGGCCGGAGCGCCGTACAGCAGATTCACTGTCAAATCAGCAGTGTTTTCATGGGTCAACGAGCTTAAAgattacaactacaacaacaatcAGTGCAATGACAAGAAAGTCTGCGGACACTACACTCAGGTTGTTTGGGCAGATTCCTATAAGGTTGGCTGTGCGGTTCAGACCTGTCCAAATGGTGTGGCCGAAACACACTTCTCTAATATACAAGGAGTGATATTTGTGTGCAACTACGCAACTGCAGGAAATTTCGCTGGTAGGTCTCCATACAAACAGGGCGCTTCATGCAGCGGCTGCGGCGGCTCAGACAAGTGTGAACGAAATCTCTGTCgtaagtgtaaaaaaaaacagcatacgCTTCACTTGATCATTAGCTGTACTTTACATCTCTCAACTTCCTCCGCAGGAAACACCGACCGAGATGCAGAGCAGAGTAAAACACACCTCACTAAACTCTTACACTCATGA

Function

symbol description
glipr1a Predicted to be located in extracellular region and membrane. Predicted to be integral component of membrane. Predicted to be active in extracellular space. Orthologous to human GLIPR1 (GLI pathogenesis related 1).

GO:

id name namespace
GO:0005576 extracellular region cellular_component
GO:0005615 extracellular space cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-110309-2 Predicted to be located in extracellular region and membrane. Predicted to be integral component of membrane. Predicted to be active in extracellular space. Orthologous to human GLIPR1 (GLI pathogenesis related 1).

Ensembl:

ensembl_id ENSDARG00000045224

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00053262 False 828 mRNA 0.50 6 2252123 2258796
TCONS_00053263 True 768 mRNA 0.49 4 2252146 2257545

Neighbor

gene id symbol gene type direction distance location
XLOC_026991 cmah coding upstream 1859 2228754 ~ 2250264 (+)
XLOC_026990 frs2a coding upstream 152542 2092683 ~ 2099581 (+)
XLOC_026989 yeats4 coding upstream 189688 2059692 ~ 2062435 (+)
XLOC_026988 NA coding upstream 265265 1983663 ~ 1986858 (+)
XLOC_026987 NA coding upstream 277229 1950010 ~ 1974894 (+)
XLOC_026993 si:ch73-89b15.3 coding downstream 8845 2267641 ~ 2290268 (+)
XLOC_026994 NA coding downstream 86852 2345648 ~ 2349381 (+)
XLOC_026995 NA coding downstream 93976 2352772 ~ 2355189 (+)
XLOC_026996 zdhhc17 coding downstream 223250 2482046 ~ 2508577 (+)
XLOC_026997 BX072538.1 coding downstream 323120 2581916 ~ 2582031 (+)
XLOC_026986 NA non-coding upstream 299124 1936477 ~ 1952999 (+)
XLOC_026985 NA non-coding upstream 385673 1865560 ~ 1866450 (+)
XLOC_026984 NA non-coding upstream 389611 1857483 ~ 1862512 (+)
XLOC_026998 NA non-coding downstream 329361 2588157 ~ 2588403 (+)
XLOC_027002 NA non-coding downstream 643551 2902347 ~ 2904041 (+)

Expression


Co-expression Network