G780096


Basic Information

Item Value
gene id G780096
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 19622885 ~ 19628052 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU888809
CTAATTAAGAATTTCACCTTAATGTATTTATATCAAATAAGGGAGAGACAGACTACATTTCTAATCTTGGGAGTCTGTGATCCCACCATAATTTCTACAGAAACACAAGCATGATTTAGCCTACtcatatgtgtgtgcgtgtttaaaCAAATCTCAACACAACACAAGCCAACACACAGGGTATAGGGCAGGTAAGGTCACTATGGTCCTACCTGAGTAGGGGAACGCAGCAGAGACTCAGACAACCTCTGTAGAATGGGCAGACCATTCCCATTCCCTGCATCACTGTTCACTCCTCCATtcactcctccaccacctccctctgATGTAGGGGAGAGTTGGGAGGTGTCGGTCAGCATCTCTCgtacacaggggggggggggggggggttgaggtccACATGGAAGTCAGAGGAGATCTTACAGCTCTTAGACACATCAAACAGAGCCAGGCTGAAGAAGAACGGCTCCACCTGGATAACAGAGGTAGATGggaaagggagtgtgtgtgtgtgggagagcgtGTCTGTGTGCATTTACGAGGTACAAACAAAGagcgtgtgtgtatgagtgtatgTGCACTTATGTAGATATAAGCATATTGAATGATGGCCATTCCTTCCAGGAACCATTAAGCCTATCTATGTTTGAGTTtaagatgggaggaggagagtagaactaTTTCCTAACCACGCAAATGTCGGTCAGCCAACATCCCCAACTCCCAACCAGCTCTATAAATGCTCTAGTGGGCATGAAGTTATTCATCACTGTGTTTCATGTCTACGATAATCCActctgaaggagggagagagggagtactcACTAGTGTGCTCTCTATACTGCTGGCTGACGTCAAAAGAGGCACTGCATTCATCTCACACTCATAGCAGAATGCTAACTAACTACATTCATCAGGAAATGTGAATGTGGATCATGACATAGGTCTCTGTAGTGTAATTCGTATTTACATTAAAATATGTACTATAATACTTTTTATACTTAAACAGATCAAATAACGATATCAACATAAGATGAATATACAGCATGAAACATGAAAAGCCTGATGTTCATTTTGTATCTGTTCTTTGTTATGCATAATTAATGTAGCACACAAATGTCCCTCTCTCAGACGGAGTGTCGAGGTGTAGTGGTGACCTACGCTGGAGCAGAagggtgtgtgtctatgtgaCCTTACATTGGTGAGAACCCCGTCCCCCCTCTCGCTGACACAGCCCTGCAGGCTGAAGGGGAGGTCATGGCAGCTGACctctggaggggagaggggaggaagaagtggaaaggagtggagaggcgggaggcgagagaggaggatgtggaggggaaggaggagagggaggtcaGGAAAAAAGATTAAGGAGGGAATGTTGGTTAGCTTTTGGCATCCATCGTCATGGAAACACATCCAATGTACATACACAGACATTCTCTAATTGAGACGTTCACTTGAtgccagtgaagccagcagggcCCTGGGACTGcccagacagacatattgttaaTCTACAGGCACACATCTATACTCATCATACCATAGGTCTGCTTTAATAGACTCAAacattcaatcaaatcaaatgttattggtcacatacacgtgtttagcagatattattatgggtgtagcgaaatgcttgcatttctagctccaatagtgcagtaatatctaacaatttcacaacaatacacacaaacctaagtaaaggaatggaattaagaatatataaatatttgggcaAGCAATggcagcatagactaagatacagtagaatagaatacagtatatacatgagatgagtaatgcaaaatatgtaaacattattcaagtgactagtgttccattattaaagtggccagtcatTTCAAGTAAATGTAtaaaggcagcagcctctaatatgctagtgatggctattgaacagtctgatggccttgagatcgaagctgtttttcaatctctcggtcccagctttgatgcacctgtactgacctcaccttctagatgatagcggggtgaacaggccgtggcttgggtggttgttgtccttgatgatctttttggccttcctgtgacatcgagtgctgtaggtgtcctggagggcaggtagtttgcccccagtgatgcgttgggcagacggcACCACCCTCTGGCGTGCCCTGCGAATGCGgggggtgcagttgccgtaccagggggTGATACAgtccaacaggatgctctcaattgtgcattggtaaaagtttgtgagggttttaggtgccaagacaaatttcttcagcctcctgaaattgaagtcttcttcaccacactctctgtgtgggtggaccatttcagtttgtcagtgatgtttacgctgaggaacttgaagctttccaccttctccactgcagtgccgttgatgtggatagcggggtactctctctgctgtttcctgaagtctacgatcagctcctttgttttgttgacgttgagtgagaggttattttcctggcaccgcactcccagggccctcacctcctccctgtaggttgtctcgtcattgttggtaatcagtccTACTACTGTTGCGTCGTCTGCAAActttatgattgagttggaggcgtgctttgCCACacgtgtgaacagggagtacaggagggggctgtacacgcacccttgtggggtccagtgttgaggatcagcgaagtggagatgttgtttcctaccttcaccacctatgggcggcccatcaggaagcccAGGACctaattgcacagggcggggttgagacccagggcctcaagcttaatgatgagcttggagggtactatggtgttgaatgctgagctgtagtcaatgaacatcattcttacataggtattcctcttgtccagatgggttaggtcagtgtgcagtgtgatggcgattgcatagtctgtggatctattgggacggtaagaaaattgaagtgggtgtagggtgtcaggtaaggtggaggtgatatgatccttgactagtctctcaaagcacttcataatgacagaagtaagtgctacggggtgatagtcatttacttcagttacctttgctttcttgggtacaggaacaatggtggccatcatgaagcatatggggacagcagactgggttagggagagattgaatacagtatgtccataaacactccagccagctggtctgcgcatgctctgaggacgcagctagggatgccgtctgggccggcagccttgcgagggttaacatgcttaaatgtcttactcacatacgccacagagaaggagagcccacagtccttggtagtgggccGCGTCGTGGGACTCTGTTATCCTCAAAACGGCCGACATTTCGCTTGTTATATactgacatttcgcttgtttgattgccttgcggagggaataactacactgtttgcatTCGGCCACATTCCCAGTCactttgccatggttaaatgctgtggatcgcgctttcagttttgtgaaAATgctggtttctggttagggtagattTTAAAAGGCACAGTGGGAACAAgatctcctatacacttcttaATAGACAAACTAGTCACCGTATCAGTGTATGTTATTCTCGGAGGCTACCCTTCAAGTGTGGATTCCAATtgatcagaccagcgttgaatagtccttaggatgggtacttcctgtttgagtttctgcctataggaagggaatATAATCAGAAGCGGTGGGTGTTGTGcgcgcctcctgagtcggactagaagtccactctgaATACCTCTTCTTCGCTGGTGGGGTTTTcgatcagcctctggaatcaCGAGATGCACGGCTGCCCTATCTATCGGCGCCAGTCCTATTGGAAATGAATAGAGTAAAACAGACCGTGCTAACCTGTGTTTCAGGGTCCTGAGTTTATTGAGCTGGTCTGTTTCCCTAGCATACTGCAGAGCGACGGAAGAAGACAAAAATAAGTAATAACAGACACATACAGCTTCAGGTCACAGCTGAGCTCGACAGAGAactccaccatccccctctcttgtCCTAAATCCCCCTCTCatttactctcctcctctcacaccatccagccccagacagacagtagagataACCTGGTCCTCTATGAAGGGGAGAGCTGCGACATCTCAGAGGAGCCAGTTAAAAAAGCCTCATCACACAGAGATTACAGCTCTCTTTGTTCTCCATGTGCTGCTCTGGGTTTATAGATACATTAAAGCAGTGAGGTCTCTATGGGATAAAGGTACTGTACTGTTGTTATGTCCAGGGTTACAGGATGTACTATACATTAGGGACCTGCTACAGATAAAAGGGAGCTTGTAAACTGTGGTTCCCTGATAGTGTAACGGTATCAAAGCTCAGTGAGCGTCACATAAATGACTAGACATAATATAGCCTATATATGTCAGGTGGAGGTATTGTCTTTCTCTAACTGACTAGAGAATGAATTCTCTAGTGCACGTGCCTTATCAATGATCATTACTGCTTATATTACTGCTTACACATACAGTATTTGAATATAACTATTtaagaCGTggagtgtatttgaggtttaaaaaggcttctgaagtttgtcactTCCactgacatttcagacttgattttcccttatgaaaaaacgtatcaacccctacaaaaatgtccatgaattataatccacatttcctgttgctgcaggatagtTGTTTGCTTTCCAGCTGTAGCAAACTAACTCAAATTAAAGATCCTACATCTGGGTGCTCTGCGTCTGAATAACCCTATAAAACCTTTTCCACCATGTACTGGGCTAGGTTCACAACCTTGTGTGTAGTAGATGAGGGGTAATACATATTCACTACTACTACAATACAGCACAGACACTGATGA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU888809 True 4874 lncRNA 0.46 4 19622885 19628052

Neighbor

gene id symbol gene type direction distance location
LOC110532957 LOC106577671 coding downstream 298153 19323732 ~ 19324732 (-)
LOC118966014 LOC106577677 coding downstream 311915 19310059 ~ 19310970 (-)
LOC110532955 NA coding downstream 329389 19292757 ~ 19293496 (-)
LOC110531676 nitr3 coding downstream 330528 19290034 ~ 19292357 (-)
LOC110532954 LOC106577681 coding downstream 361801 19259903 ~ 19261084 (-)
LOC110531695 LOC106577660 coding upstream 234731 19862783 ~ 19868337 (-)
LOC110531696 LOC106577660 coding upstream 241386 19869438 ~ 19872456 (-)
LOC110531700 LOC106577652 coding upstream 321795 19949847 ~ 19961244 (-)
LOC110531702 LOC106577654 coding upstream 338917 19966969 ~ 19972714 (-)
LOC110531704 LOC106608762 coding upstream 394142 20022194 ~ 20075490 (-)
G780086 NA non-coding downstream 12090 19609556 ~ 19610795 (-)
G779055 NA non-coding downstream 27103 19595453 ~ 19595782 (-)
G779053 NA non-coding downstream 27434 19595038 ~ 19595451 (-)
G779050 NA non-coding downstream 30713 19591852 ~ 19592172 (-)
G778867 NA non-coding downstream 179532 19399573 ~ 19443353 (-)
G780127 dock11 non-coding upstream 37067 19665119 ~ 19671198 (-)
G780140 NA non-coding upstream 64587 19692639 ~ 19701481 (-)
G780158 NA non-coding upstream 103666 19731718 ~ 19737487 (-)
G780175 NA non-coding upstream 135876 19763928 ~ 19764221 (-)
G780185 NA non-coding upstream 147368 19775420 ~ 19777121 (-)
G778216 NA other downstream 1264782 18355441 ~ 18358103 (-)
G776822 NA other downstream 1962402 17659690 ~ 17660483 (-)
G776820 NA other downstream 1963482 17659016 ~ 17659403 (-)
G776814 LOC106600668 other downstream 1966560 17655988 ~ 17656325 (-)
G776812 LOC106566110 other downstream 1966905 17655594 ~ 17655980 (-)
G780209 NA other upstream 189639 19817691 ~ 19824571 (-)
LOC110531717 LOC106577635 other upstream 674026 20302051 ~ 20324316 (-)
LOC110531730 adgrl3 other upstream 1302908 20930960 ~ 21272646 (-)
G782003 NA other upstream 2147666 21775718 ~ 21776210 (-)

Expression


Co-expression Network