XLOC_026994


Basic Information

Item Value
gene id XLOC_026994
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 2345648 ~ 2349381 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00057524
ATTTGAAATGGAATGTATATTTTAAAGGTATGAAATTGTCATTCATATCAGCATAAGGAACGATGCCGTCGCATCAACAAAACGTCATTTTCACACAGCAGAAAGCAAACAACAGGCGATCACTGATGCATTCCTGATCAATCAACCGTTACTCAGTTCTGTCACCGTGTGTTTGACTTATGCAAAGCAATATTGATCAGTATACACAGACGGAGGCCATATTGAGGAGACAACATTCAAGATGTTTACGTTTTCAACGCATCAAACATGGCGTCCGCATTGAAATGAATGgcacaatcagaaaaaaataagatgTACTTAACATTCTGACAACCATGAAGCACATACCTTGGTTTGAATATGAAGTTATGctgtaataaatatgttaattaacagattacagtttatttatggttgtgcattgcattatgggatgtaaATCTCTGCTCTgtagacttttgatgttgaaaattcaactctacagtttaaaaaaGCGACTAttagtgacattttagtagtttaaaataatataatgtatattaaataatagataggtgtgtaaaataacagataaagcactggcagcttattacaaagGGTTTTGTagagtaatatacaacaccaacccagaccatatatcactttaaactattaaaaatgtcaataaaagtgacttttttaaacttttgaagGTTAGAAGTTGTTGGAAAAACAGATTAAGATcccaaaattaaatacaaaagcataaaaaataccccaaactgctaatttatgcatatttttttacagcgtGAAACCAAGAATATACTTTAAAAACCACTTGGATCGTCCAGTTAAACAAGCCAACTTCATATCAAAGCAAGAAACCCATCTACAGCAAGTGTACTTAAACCCAACATTCGAATAGGCAAATGAGCGGatacaaaatatatatgtacaaataAATATAGAACCAAACGCAGGCTTCATGGATTAGAGCAATCCGAGAGAGACTCCCCATGAATGGCTGATGGTGGATTGAGtctgcagttttttttctcccagttGTGCGACTCTTTAAAATCCCTGCACCGTAACAAAATTGGCTCTCCTGGAAGATATTGATTACGCGTCCAGAGCCGCAAAGAAATGACGGATGAAACTGCGCCGAAATCAAGAGTGGAGGTGGCACTTGTGTTCCGGACAGACCGATAGTGACGCACTGAAGGTTTTTATAGCACATTATGGAGGAGACCGGGGCTGGCCGCACAGATTTCACCTCATATAAATACAGTCTTCGCTATTAAGAATCATGTCAACGTTTACAGCCAGACAATACAGTGTAAAATGAAGGTTTACAGGAAAATAGGATGCAAAATATTCAATTGTGAATTATACAAGCAATGctggaatgcaaaaaaaaaaaaactgattgaccaaaataaactaaataaattgaaaacagcATAGAAATTCAACTCATTTTGCACAGCAGATTGAAACCATCATGTGACAGGACGCCCAAATTTGGCTTTTTTTGAAGGGTGAATATGCTACTagcatgttattttaatatattatgtcACAATGGGGAAAAAACAATAGATAGaccaaaatatattgtataaattgatgaaatgaatataaattgaGCTCATTTTGGACAGCAGATTGAAATTATCATGTTACAAGTTGCCCAAATTTGCCTTTTTTTGGAGCGGGAATATGATACTTGCATGTTATTTTGATATATTATGTTACATTGTCTCagtccagaataaaaaaatgataaactgACCAAAACTAATTACATAAATTGAAGAAACAGCATAAAAATTAAGGTAATTTTGGACAGCAGATAGGAATGATCATGTGACAGGTTGTCCAAATTCAGGTTTTTTTGGTTTGTGGAAAATATACTTGCATGTAATCTTAATATATTATGTTCCGTTACGTCACAATGTGGGGGGGGGAGGAGGAGGGTAAATGATAGATTAACCATAATAAATCACATAAATTGAAGAAACAGCGTTGAATTTTATCTAATTTTGGACAGCAGATTGGAATCATCATGTGACAGGTTGCCCAAATTTGGATATGATTTGGAAAATATGCTACTTGCATGTTATCTTAATATAACCTGCAATGTTTTAACTGTTTACTTATCAAGTATTACAATAAAATCATATTACAAGACTCAGTTGGAACATAGAATTCACAAAAATTTGCTTAATTTTAGATTATGCTCCTAAACCCAAGCACAAGCAGTGCATAGAAATACACCCTTGAcccaaaatgacatttaaaaaaaaaaaaaaaaaaaaaaagatctatacCCGTTTCCATTACTCTATCATCATGTAAACCTTCtacatttacagttttaaatgataaaataattctgcaaaaaaaaaaaaaaaaaaaaaaaaacgatgcagAAAAATACAGAATTTGTCCATCAttaaggcacagttcacccataaatgaaaacACACTCATTACTTTCTCTCCCTCGAGTGGTTATGAactgagtttctttattctgctgaatCAAAATGAAGACAAAGTTgaaaaccactgacttccacactgaaaaaaacaccaataagttaatatatagccgattaaaatgtcttattttgtgttcaagagaaaaaaacttataaatgaGACAgaatttcagttttgggtgaactatcatttAAAATCGCAGTTATTAAAAGGATAATCACATGATATCTTCCAAATGAAATCAAAAATACTCCACAATCTATTCTATTCTGACCTTAATGTGTGTTTACTGAACACACGTTATAAAAATATCACAAGCATACATAAAAACGAGAAATCCTAAATTAAGACatttttcacacaattaattgGTTTTTACTAAATTTAAGGTGATTGCAAACTtatattggctgaatttaaacaaagttaaCCTTTAAAGAGGaatagtaaatccaattaattgatttttttcagtgcatcacGCATAACCAACGCCAGGACACATGACAACGCATGCA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00057524 True 3008 lncRNA 0.33 2 2345648 2349381

Neighbor

gene id symbol gene type direction distance location
XLOC_026993 si:ch73-89b15.3 coding upstream 55380 2267641 ~ 2290268 (+)
XLOC_026992 glipr1a coding upstream 86852 2252123 ~ 2258796 (+)
XLOC_026991 cmah coding upstream 95384 2228754 ~ 2250264 (+)
XLOC_026990 frs2a coding upstream 246067 2092683 ~ 2099581 (+)
XLOC_026989 yeats4 coding upstream 283213 2059692 ~ 2062435 (+)
XLOC_026995 NA coding downstream 3391 2352772 ~ 2355189 (+)
XLOC_026996 zdhhc17 coding downstream 132665 2482046 ~ 2508577 (+)
XLOC_026997 BX072538.1 coding downstream 232535 2581916 ~ 2582031 (+)
XLOC_026998 NA coding downstream 238776 2588157 ~ 2588403 (+)
XLOC_026999 gpr22a coding downstream 269751 2619132 ~ 2623487 (+)
XLOC_026988 NA non-coding upstream 358790 1983663 ~ 1986858 (+)
XLOC_026987 NA non-coding upstream 370754 1950010 ~ 1974894 (+)
XLOC_026986 NA non-coding upstream 392649 1936477 ~ 1952999 (+)
XLOC_026985 NA non-coding upstream 479198 1865560 ~ 1866450 (+)
XLOC_026984 NA non-coding upstream 483136 1857483 ~ 1862512 (+)
XLOC_027002 NA non-coding downstream 552966 2902347 ~ 2904041 (+)
XLOC_027004 NA non-coding downstream 955797 3305178 ~ 3307854 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G224314 NA non-coding CI01000052 null 1508387 ~ 1508669 (-)
rainbow trout (Oncorhynchus mykiss) G222741 NA non-coding NC_048567.1 CM023221.2 9806566 ~ 9807900 (+)
eurasian perch (Perca fluviatilis) G187803 NA non-coding NC_053129.1 CM020926.1 27660365 ~ 27660657 (+)