G779183 (LOC106577660)


Basic Information

Item Value
gene id G779183
gene name LOC106577660
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 19862674 ~ 19870992 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU887788
TCTCCTCAAATTTTTTGATTTACTATTATTTTTATTACTGGCCAATCTATCCCCTGTATGAATAAAAGTAATTTTGTTTTCCATTTTTGTTACATGCACATTATTCATACACAGTATTTTTTATACAAGGTATTACATGTCAGAAATAGTTTGATATACACATTACACCTGAAATGGTACTCAGGCATTTCCGGTATGCATGATATGGTGTTTTCAGTCCTAACTATTACACAGATTATGAGTTTCTAATCCCACCCCTCAgttactctcagcccatcccacctaccTCCATATCTTGATTTCCATGTACAATATATTTCCAATATATATTTTGATCCCTTCCAACATTAGAAAGAAGAGAAATGGTCATTTCCAATGATAGGCAATTCTTGTTATAGTCAAACCAATGCCGCAGCCTCTTGACAACCCTGAAACATATGGATTCTAAAATGGGTGAAATCCTTATATTTCTTGCCACATTTCCCACAGACGTGGGGTTCGGTGACAGAGTGAAGTTTCACTATGTGGGTTTTAAGGTAGGATGCCAGAGCAAAGGTTTTTTCACAGTGATCACAGGTGAACGGCTTCTCTCCGGTGTGCAAGGCCGCATGGACTTTATATGATTCGTGTTGATAGAAACCCTTGCCACATTCGTCACAGGTATAAGTTGGGTCTTCGGTGTGGGTGCGTTCGTGTCCCTTGAGCCCACGTTCACCTTTGAAGCCTTTCCCACAGTGGCTGCACACGAATGGCTTGCTGGTCAGGTGCGAGATCTCATGCCTTCTGAGGTAATGTGACCGGATAAAGGTCATTGGGCATTTGTCGCAAGAATACGGCTTGGAATCCGTGTGCGTCTTCTTATGGGCATTAAGAGTATACTTGGTTTTGAAACACATCTGACATTGAGGGCACTGGAATGCTCTCTCCCCTGAATGAACACTTGTGTGAATTTTCAAATTTGTCTTTGTTGCGAAGCATTTCCCACATGTGGGACATTGGAATGGCTTCTCTCCCCTATGGACTGATGCTTGGTGTTGTTTGAGCTGAGAAGGAGTCTTGAAACCTTTCCCACACAATTCACAACGGTGAGATCCTCCTCCACTGTGAGTTAGCTGGTGATTCTTGAGGTATTTCAACTTAACAAAGGTTTTTGGACATTTGTCACACGCATATGAATCTGAATTTGAATTGTGCATCGTTGTGTGTTCCTTGAAGCCCTTTTTACTTTTAAAACACTTCTGACACACGAGGCATCGGAACGGTTTCTCTGTTGAATGAACGCTTGCGTGAGTGTCCAAATAACTCTTTGTTGCAAAGCACTTCCCACATGTTGGACACTCAAGTGGCTTCTCTCTTCTGTGGACCACTGCTTGGTGTATTCTGAGCTTCCAAGCAGTCGGGAAACATTTCCCGCATAATTCACAACAATaaggtctctctcctgtgtgagtctgTTGATGCAGTTTTAAATTACTTGAATTCTTAAAAACCTTACCGCAGTCCAGACAGTGGTGCTCTTTCCTGGTGGTGGTAGTCTGTTTTTTCTTTATGTTGGGCCTTGGCTTTATGTTGTGAACATATTTGTCATTCGAGGTTTGTCCAGCTTTAGCATTCTCCTCCCATTGGTCATCAGCGTTTTCCTCACTTCCGTCTGATTCTGCCGCTGTGGGTTGCGCTTC

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU887788 True 1679 lncRNA 0.42 2 19862674 19870992

Neighbor

gene id symbol gene type direction distance location
LOC110531693 LOC106577661 coding upstream 8954 19825712 ~ 19853720 (+)
LOC110531694 LOC106577663 coding upstream 38135 19817663 ~ 19824606 (+)
LOC110532967 ndufs2 coding upstream 45271 19807717 ~ 19817403 (+)
LOC110531692 LOC106577665 coding upstream 55832 19771166 ~ 19806842 (+)
trnar-ucu-3 NA coding upstream 92807 19769794 ~ 19769867 (+)
LOC110531697 NA coding downstream 5229 19876221 ~ 19914138 (+)
LOC110531699 LOC106577657 coding downstream 49331 19920323 ~ 19939202 (+)
LOC110533004 NA coding downstream 71683 19942675 ~ 19946522 (+)
LOC110531703 LOC106577651 coding downstream 138191 20009183 ~ 20090543 (+)
LOC110531706 naa38 coding downstream 208390 20079382 ~ 20082084 (+)
G779138 NA non-coding upstream 96958 19765207 ~ 19765716 (+)
G779137 NA non-coding upstream 98534 19763928 ~ 19764140 (+)
G779083 NA non-coding upstream 155727 19636308 ~ 19706947 (+)
G779052 NA non-coding upstream 267261 19595188 ~ 19595413 (+)
G779189 NA non-coding downstream 3495 19874487 ~ 19874811 (+)
G779212 NA non-coding downstream 45399 19916391 ~ 19918384 (+)
G779227 NA non-coding downstream 77169 19948161 ~ 19948382 (+)
G779266 NA non-coding downstream 130761 20001753 ~ 20002034 (+)
G779270 NA non-coding downstream 133556 20004548 ~ 20004785 (+)
LOC110531664 LOC106577696 other upstream 1205100 18656177 ~ 18673318 (+)
G777396 NA other upstream 1362656 18499614 ~ 18500018 (+)
G777165 NA other upstream 1754192 18108019 ~ 18108482 (+)
G777113 NA other upstream 1857006 18003267 ~ 18005668 (+)
G779291 chd3 other downstream 168619 20039611 ~ 20040283 (+)
G779964 NA other downstream 1230587 21101579 ~ 21102271 (+)

Expression


Co-expression Network