G779212


Basic Information

Item Value
gene id G779212
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 19916391 ~ 19918384 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU887822
ggcctcccgggtggcgcagtggttaagggcgctgtactgcagcgccagctgtgccatcagagtccctgggttcgcgcccaggctctgtcgtaaccggccgcgaccaggaggtccgtggggcgacgcacaattggcctagcgtcacccgggttagggagggcttggtcggtaggggtgtccttgtctcatcgcgcaccagcgactcctgtggcgggctgggcgcagtgtgcgctaaccaaggtggccaggtgcacggtgtttcctccggcgcattggtgcggctggcttccgggttggatgcgtgctgtgttaagaagcagtgcggcttagttgggttgtgtatcggaggacgcatgactttcaaccttcgtctctcccgagcccgtacgggagttgtagcgacgagacaagatagtagctactacaacaattggataccacgaaattgg
>TU887823
ggcctcccgggtggcgcagtggttaagggcgctgtactgcagcgccagctgtgccatcagagtccctgggttcgcgcccaggctctgtcgtaaccggccgcgaccaggaggtccgtggggcgacgcacaattggcctagcgtcgcccgggttagggagggcttggtcggtaggggtgtccttgtctcaccgcgcaccagcgactcctgtggtgggctgggcgcagtgtgcgctaaccaaggtggccaggtgcacggtgtttcctccggcgcattggtgcggctggcttccgggttggatgcgtgctgtgttaagaagcagtgcggcttagttgggttgtgtatcggaggacgcatgactttcaaccttcgtctctcccgagcccgtacgggagttgtagcgacgagacaagatagtagctactacaacaattggataccacgaaattgg

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU887822 False 449 lncRNA 0.62 2 19916391 19918384
TU887823 True 449 lncRNA 0.62 2 19916391 19918384

Neighbor

gene id symbol gene type direction distance location
LOC110531697 NA coding upstream 2253 19876221 ~ 19914138 (+)
LOC110531693 LOC106577661 coding upstream 62671 19825712 ~ 19853720 (+)
LOC110531694 LOC106577663 coding upstream 91852 19817663 ~ 19824606 (+)
LOC110532967 ndufs2 coding upstream 98988 19807717 ~ 19817403 (+)
LOC110531692 LOC106577665 coding upstream 109549 19771166 ~ 19806842 (+)
LOC110531699 LOC106577657 coding downstream 1939 19920323 ~ 19939202 (+)
LOC110533004 NA coding downstream 24291 19942675 ~ 19946522 (+)
LOC110531703 LOC106577651 coding downstream 90799 20009183 ~ 20090543 (+)
LOC110531706 naa38 coding downstream 160998 20079382 ~ 20082084 (+)
LOC110532969 NA coding downstream 248211 20166595 ~ 20173950 (+)
G779189 NA non-coding upstream 41580 19874487 ~ 19874811 (+)
G779184 LOC106577660 non-coding upstream 44348 19864914 ~ 19872043 (+)
G779183 LOC106577660 non-coding upstream 45399 19862674 ~ 19870992 (+)
G779138 NA non-coding upstream 150675 19765207 ~ 19765716 (+)
G779227 NA non-coding downstream 29777 19948161 ~ 19948382 (+)
G779266 NA non-coding downstream 83369 20001753 ~ 20002034 (+)
G779270 NA non-coding downstream 86164 20004548 ~ 20004785 (+)
G779306 chd3 non-coding downstream 143771 20062155 ~ 20062711 (+)
LOC110531664 LOC106577696 other upstream 1258817 18656177 ~ 18673318 (+)
G777396 NA other upstream 1416373 18499614 ~ 18500018 (+)
G777165 NA other upstream 1807909 18108019 ~ 18108482 (+)
G779291 chd3 other downstream 121227 20039611 ~ 20040283 (+)
G779964 NA other downstream 1183195 21101579 ~ 21102271 (+)
G783405 LOC106577615 other downstream 3125623 23044007 ~ 23067530 (+)

Expression


Co-expression Network