G779291 (chd3)


Basic Information

Item Value
gene id G779291
gene name chd3
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 20039611 ~ 20040283 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU887922
CCCATCAGCAATGTTGAACATGAAGCGCCGTCGCTCGGGGGGGGTGATGGGGGGTTTTGGCAAGGCATCTTTGGCAACCTCCTCCTTCGCCACTTCTTTCCCAGCATCCTTTTCACCTTTTACTTCCTCTTTCATCACGTCAGAGGGTTGCTGTCGCTCCATCCTTTCCATGTTGTCTGGCCCTTCTGTGGGGACAGGGGCCTCCTCACTCTTCTCCATGTCCTTTTCCTTGTTgttgtccttctctttctcctcctccaccttctctctAGGTGAGAGTGTTACACTACCTGGTTTCTCATGTTTGACCTCCGACCCTTGCTTAGTTGTTTCCCCGAAGGACCCCTCCTCCTTACTCTCCTCCTCAACTTTCTTCTCCTCCACTAGGGCCGGAAGGGTGTCAGTCGTTTTGGTTTctttcccctccttctcctcttttgtACCCTTCTCCTCCTTGTCTGTTGTTGTGCAAGGGGATAATTCTTGTAGTGCTTCTTTG

Function

symbol description
chd3 Predicted to enable several functions, including ATP binding activity; DNA helicase activity; and metal ion binding activity. Acts upstream of or within central nervous system development and developmental growth. Is expressed in blastomere and central nervous system. Orthologous to human CHD3 (chromodomain helicase DNA binding protein 3).

NR:

description
chromodomain-helicase-DNA-binding protein 3-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU887922 True 499 TUCP 0.52 2 20039611 20040283

Neighbor

gene id symbol gene type direction distance location
LOC110531703 LOC106577651 coding upstream 19182 20009183 ~ 20090543 (+)
LOC110533004 NA coding upstream 93089 19942675 ~ 19946522 (+)
LOC110531699 LOC106577657 coding upstream 100409 19920323 ~ 19939202 (+)
LOC110531697 NA coding upstream 125473 19876221 ~ 19914138 (+)
LOC110531693 LOC106577661 coding upstream 185891 19825712 ~ 19853720 (+)
LOC110531706 naa38 coding downstream 39099 20079382 ~ 20082084 (+)
LOC110532969 NA coding downstream 126312 20166595 ~ 20173950 (+)
LOC110531712 LOC106577641 coding downstream 146444 20186727 ~ 20254184 (+)
LOC110532972 LOC106577640 coding downstream 199474 20239757 ~ 20247172 (+)
LOC110531716 LOC106577637 coding downstream 239791 20280074 ~ 20282985 (+)
G779270 NA non-coding upstream 34826 20004548 ~ 20004785 (+)
G779266 NA non-coding upstream 37577 20001753 ~ 20002034 (+)
G779227 NA non-coding upstream 91229 19948161 ~ 19948382 (+)
G779212 NA non-coding upstream 121227 19916391 ~ 19918384 (+)
G779189 NA non-coding upstream 164800 19874487 ~ 19874811 (+)
G779306 chd3 non-coding downstream 21872 20062155 ~ 20062711 (+)
G779274 NA non-coding downstream 46894 20087177 ~ 20088195 (+)
G779334 NA non-coding downstream 64479 20104762 ~ 20105081 (+)
G779335 NA non-coding downstream 65108 20105391 ~ 20105755 (+)
G779336 NA non-coding downstream 65824 20106107 ~ 20108010 (+)
LOC110531694 LOC106577663 other upstream 215005 19817663 ~ 19824606 (+)
LOC110531664 LOC106577696 other upstream 1382037 18656177 ~ 18673318 (+)
G777396 NA other upstream 1539593 18499614 ~ 18500018 (+)
G779964 NA other downstream 1061296 21101579 ~ 21102271 (+)
G783405 LOC106577615 other downstream 3003724 23044007 ~ 23067530 (+)
gba3 LOC106577614 other downstream 3065188 23105173 ~ 23111380 (+)
LOC110531760 LOC106577603 other downstream 3725422 23765275 ~ 23780276 (+)

Expression


Co-expression Network