G779306 (chd3)


Basic Information

Item Value
gene id G779306
gene name chd3
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 20062155 ~ 20062711 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU887938
TGACAAACTCTGGCATCTCCAGATCGTCTCTCTCCCATGTGCACTGGTCGTAGGTCAGGTCTCTCCACTTGACCAGGTAGTGGTATATCCCTTTCTTGTCCATaCTGTGGTTGATGATGCGGTGGACCATCATCCATTCAGGCTTGATGCCGTATTTATAGAACTTGTCATCCAGGGCAGCATAGTCTGGGTCTTTcagcctcctcttctcactcttaatactctcctcctctccccccgaCCCATAGTCCAGACTGGGAGGCTCCTCCATATCTGTCTTCCTCTGGTAGTTACGGAACATCACAGAGTGGAAGATCTCCAGCT

Function

symbol description
chd3 Predicted to enable several functions, including ATP binding activity; DNA helicase activity; and metal ion binding activity. Acts upstream of or within central nervous system development and developmental growth. Is expressed in blastomere and central nervous system. Orthologous to human CHD3 (chromodomain helicase DNA binding protein 3).

NR:

description
chromodomain-helicase-DNA-binding protein 3-like isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU887938 True 324 lncRNA 0.51 2 20062155 20062711

Neighbor

gene id symbol gene type direction distance location
LOC110531703 LOC106577651 coding upstream 41726 20009183 ~ 20090543 (+)
LOC110533004 NA coding upstream 115633 19942675 ~ 19946522 (+)
LOC110531699 LOC106577657 coding upstream 122953 19920323 ~ 19939202 (+)
LOC110531697 NA coding upstream 148017 19876221 ~ 19914138 (+)
LOC110531693 LOC106577661 coding upstream 208435 19825712 ~ 19853720 (+)
LOC110531706 naa38 coding downstream 16671 20079382 ~ 20082084 (+)
LOC110532969 NA coding downstream 103884 20166595 ~ 20173950 (+)
LOC110531712 LOC106577641 coding downstream 124016 20186727 ~ 20254184 (+)
LOC110532972 LOC106577640 coding downstream 177046 20239757 ~ 20247172 (+)
LOC110531716 LOC106577637 coding downstream 217363 20280074 ~ 20282985 (+)
G779270 NA non-coding upstream 57370 20004548 ~ 20004785 (+)
G779266 NA non-coding upstream 60121 20001753 ~ 20002034 (+)
G779227 NA non-coding upstream 113773 19948161 ~ 19948382 (+)
G779212 NA non-coding upstream 143771 19916391 ~ 19918384 (+)
G779189 NA non-coding upstream 187344 19874487 ~ 19874811 (+)
G779274 NA non-coding downstream 24466 20087177 ~ 20088195 (+)
G779334 NA non-coding downstream 42051 20104762 ~ 20105081 (+)
G779335 NA non-coding downstream 42680 20105391 ~ 20105755 (+)
G779336 NA non-coding downstream 43396 20106107 ~ 20108010 (+)
G779339 NA non-coding downstream 47996 20110707 ~ 20110927 (+)
G779291 chd3 other upstream 21872 20039611 ~ 20040283 (+)
LOC110531694 LOC106577663 other upstream 237549 19817663 ~ 19824606 (+)
LOC110531664 LOC106577696 other upstream 1404581 18656177 ~ 18673318 (+)
G779964 NA other downstream 1038868 21101579 ~ 21102271 (+)
G783405 LOC106577615 other downstream 2981296 23044007 ~ 23067530 (+)
gba3 LOC106577614 other downstream 3042760 23105173 ~ 23111380 (+)
LOC110531760 LOC106577603 other downstream 3702994 23765275 ~ 23780276 (+)

Expression


Co-expression Network