G779340


Basic Information

Item Value
gene id G779340
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 20112717 ~ 20112945 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU887972
TCCTTCCTGTGTTCAAGTGGGTGTAATAAATACCCCTATTCCTGCTCCGTCTCTTCATTTGCATTATATCCGTTGTGCCATGGTGGAACCCACAGTCCTGAATCTAGCTTacaatccatggtggcagcaacagtcctgaacctagcttacaatccatggtggcagcaacagtcctgaacctagcttacaatccatggtggcagcaacagtcctgaacctagtttacaat

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU887972 True 229 lncRNA 0.47 1 20112717 20112945

Neighbor

gene id symbol gene type direction distance location
LOC110531706 naa38 coding upstream 30633 20079382 ~ 20082084 (+)
LOC110531703 LOC106577651 coding upstream 92288 20009183 ~ 20090543 (+)
LOC110533004 NA coding upstream 166195 19942675 ~ 19946522 (+)
LOC110531699 LOC106577657 coding upstream 173515 19920323 ~ 19939202 (+)
LOC110531697 NA coding upstream 198579 19876221 ~ 19914138 (+)
LOC110532969 NA coding downstream 53650 20166595 ~ 20173950 (+)
LOC110531712 LOC106577641 coding downstream 73782 20186727 ~ 20254184 (+)
LOC110532972 LOC106577640 coding downstream 126812 20239757 ~ 20247172 (+)
LOC110531716 LOC106577637 coding downstream 167129 20280074 ~ 20282985 (+)
si:ch73-335l21.4 rn182 coding downstream 221558 20334503 ~ 20336164 (+)
G779339 NA non-coding upstream 1790 20110707 ~ 20110927 (+)
G779336 NA non-coding upstream 4707 20106107 ~ 20108010 (+)
G779335 NA non-coding upstream 6962 20105391 ~ 20105755 (+)
G779334 NA non-coding upstream 7636 20104762 ~ 20105081 (+)
G779274 NA non-coding upstream 24522 20087177 ~ 20088195 (+)
G779342 NA non-coding downstream 9775 20122720 ~ 20122920 (+)
G779344 NA non-coding downstream 11090 20124035 ~ 20124348 (+)
G779350 NA non-coding downstream 21429 20134374 ~ 20134811 (+)
G779351 NA non-coding downstream 22619 20135564 ~ 20138117 (+)
G779352 NA non-coding downstream 25332 20138277 ~ 20144835 (+)
G779291 chd3 other upstream 72434 20039611 ~ 20040283 (+)
LOC110531694 LOC106577663 other upstream 288111 19817663 ~ 19824606 (+)
G779964 NA other downstream 988634 21101579 ~ 21102271 (+)
G783405 LOC106577615 other downstream 2931062 23044007 ~ 23067530 (+)
gba3 LOC106577614 other downstream 2992526 23105173 ~ 23111380 (+)
LOC110531760 LOC106577603 other downstream 3652760 23765275 ~ 23780276 (+)
LOC110531761 LOC106577604 other downstream 3689641 23802151 ~ 23804811 (+)

Expression


Co-expression Network