G779352


Basic Information

Item Value
gene id G779352
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 20138277 ~ 20144835 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU887984
TTTATTTCCTTAATTGCGACAGCAAAAACTCTGACATCTAAAGATTCCAGTTGCAGCTTATATTCACTAGACAATGGGACACTTCCAAGAAAGATAATGCATTAgataaacatacacactatagttttttgtttgttttttgtacctttatttaacaaggcaagtcagttaagaacaaattcttattttcaatgacggcctaggaacagtgggttaactgcctgttcaggggcagaacgacagatttgtcgttccggttactagtccaacgctctaaccactaggctaccctgccacactTATTATTACATTTGATTAACTTGACAAACTTTTTTTTGGTAACTTTATTTCAAATGCTGAAATCATAGTGAATTGATGTCCAATGGCATGGAAATGAGCACAGACCTCAAATCAGTTATTGATAAAACAATACAGTATTCAATTCATAGACTAGGAAAtagcggagcgatttctgcacagTGCACCTTTAAAGAGAATCCTATTTGATTTACTGGAAAAACACTATTCAACACAAGTTTTGCTGAACAGTAGGCTggtttgaaatgtctttattgtgGCAGGATGTGAGGAAACAGTCGCCAAGCCACCACTAACACTTCACATGAGTTTTTCCCAATGATAATGCTTATAGTACATACTGTTTTATTTCTCATTGAATTCAATGGGGAAGATGTTAGATTTTTTAGTTGATGTTATTAATcatgttagtgtgtttagttacaGCAAATAGACCAGATTGTCAAAAACCCTTTAGTCAAAAAAAAAGTATCAGAATCACATGGAAAAGTCACATGAGAATGAACATGCAAAATCTTTTAGATTAATTCTAATACTTTCATGAATAATCAATAGTAGTCAACATATTGAAGATGAATCTGATGCTCATGTGCAGTAGCCCACAGTGACTAAGTTTACGTCCATGATTCTATTGGATTATGTTGGTGATAATAGGATTTATAATTGAAGAGGATTTTGCTAAATTGATATTCCATTGACAGCTGACACACATATGTGCAAGAGTGTTCAGCATATTCTAAAATAGTTTTGTAGTTCCAAATAAAGTGTTTAAATGCCTAATATTGCCTACTATTCTCCTTTCATCCCATTGGAACAAAATCCAACTCATAAATGCTTCATTTGGATTACTCTTGCCCAATAGCGGTGTTTTGCTGCATTCaggtgctagtcggaactaggataCTCTGAAATGTCCAACATGCTAACTGGTTGAATGCAGCATGTGTATAACTACAAGCATTTGTATGGAGTGTTATATTCCAAATGAGTGTTCATTATGACTGATATTACGGGTACATTTCAGCACcctcagtagctaggtttccatccaattggagaCAGATTTGCATTTGAATATTAAAAAACATGTCCTGACGAAAAGGACTCTGAGCCAGTGCATCATAACCATCATATTGTTTGAAGGTACTGCAGCCTGCTCATTGATTGATGGCTCCCTAAAACCTGAAATAAGGCTCTCATAGGATTGCCTCTGATAATTCAAAGGCAATAAGGCTCTCATAGGATTGCCTCTGATAATTCAAAGGCAGTCAGCCTTTGAATTATCAGAGGCAATCCTATGAGAGCCTTATTTCAGCACTCACTGAATTGCTGAAAGAGTTTGATAGCCATCACTATCACTGCACTAATGTTCAACATGACAGAGGAAAATAATCTAAACAATGACAGTCTCATCATGGTTGGTTTGATATATACATATATTGATGTAGATTATCACGCTCAGGTCCGGGCTGGTCCACCCGGCATTTcggggcaaatgccagatgggctggtgcATTTTTAGTCTAGTGGGCCTGTCTAACTTATTTTATTTTGTTGTGCACGATGatcattatctggctaataatgggggccTTGAGGAAAATAAATGGGCCAGTGTAGGGACCTCAAGGGGAAAGATGGGTGTTGAAAATGCCAGGgccgatttctggtcccagtccgctCCTGATCACACTACCTGTAACAAAGTGGCAAAAATAATGTATTGATGACTCAAaggtcaaatgtatttacaggGCGGGTTCTGGGACGGGGTGATTTCAATATGACGGTTGGAAATGTATGCGTTTGAAAGTGACCATAACCTACCCTTCATAATGTTGACCCAGCCTCAAATTCCAACAAATGATGGAAGCAACAATTCTAGGGTAATGGACAACAAAGCTTACATACACTTGGAAAGAGAGCCATTGCTATAATCTCTTCTGTGACAGCAAGGGCATCGCTGTTGACGGCTAATTCAATTTTTAagtgaaaaataaataatgaataaatTAGTACATTTTCAAATTTTGTGTTTGGAAAAAGTGAAATAATGCAGATACACCTGAACGATGAGACAGAGTGTCCTGGCAGAAGTAAGGATGTAATTATAAACTGTTATCAAAGCTCAACACAAAACTGATGTTCAAAAATAAAAACTC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU887984 True 2480 lncRNA 0.37 2 20138277 20144835

Neighbor

gene id symbol gene type direction distance location
LOC110531706 naa38 coding upstream 56193 20079382 ~ 20082084 (+)
LOC110531703 LOC106577651 coding upstream 117848 20009183 ~ 20090543 (+)
LOC110533004 NA coding upstream 191755 19942675 ~ 19946522 (+)
LOC110531699 LOC106577657 coding upstream 199075 19920323 ~ 19939202 (+)
LOC110531697 NA coding upstream 224139 19876221 ~ 19914138 (+)
LOC110532969 NA coding downstream 21760 20166595 ~ 20173950 (+)
LOC110531712 LOC106577641 coding downstream 41892 20186727 ~ 20254184 (+)
LOC110532972 LOC106577640 coding downstream 94922 20239757 ~ 20247172 (+)
LOC110531716 LOC106577637 coding downstream 135239 20280074 ~ 20282985 (+)
si:ch73-335l21.4 rn182 coding downstream 189668 20334503 ~ 20336164 (+)
G779351 NA non-coding upstream 160 20135564 ~ 20138117 (+)
G779350 NA non-coding upstream 3466 20134374 ~ 20134811 (+)
G779344 NA non-coding upstream 13929 20124035 ~ 20124348 (+)
G779342 NA non-coding upstream 15357 20122720 ~ 20122920 (+)
G779340 NA non-coding upstream 25332 20112717 ~ 20112945 (+)
G779404 NA non-coding downstream 61791 20206626 ~ 20206840 (+)
G779405 NA non-coding downstream 62226 20207061 ~ 20207283 (+)
G779407 LOC106577639 non-coding downstream 74208 20219043 ~ 20223327 (+)
G779446 NA non-coding downstream 156920 20301755 ~ 20303563 (+)
G779291 chd3 other upstream 97994 20039611 ~ 20040283 (+)
LOC110531694 LOC106577663 other upstream 313671 19817663 ~ 19824606 (+)
G779964 NA other downstream 956744 21101579 ~ 21102271 (+)
G783405 LOC106577615 other downstream 2899172 23044007 ~ 23067530 (+)
gba3 LOC106577614 other downstream 2960636 23105173 ~ 23111380 (+)
LOC110531760 LOC106577603 other downstream 3620870 23765275 ~ 23780276 (+)
LOC110531761 LOC106577604 other downstream 3657751 23802151 ~ 23804811 (+)

Expression


Co-expression Network