G779407 (LOC106577639)


Basic Information

Item Value
gene id G779407
gene name LOC106577639
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 20219043 ~ 20223327 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU888048
TGTCTATAGATTacatgtcccctctctctctttttcctgagTTTCTGTTGGCCAACAGTGATGTTTCCAGGAGTTTAAGGTTCATATGTTGGTGGTCTCATCTTCCTCAGGGGTCTCTGTGTCATGTGATATGCATGTCTGGGCTTCAGGCAGGTTGTCACACTGCAGATAGAAATACACAACCtggacCTGCACTTCCACCTCCTGAGAGATGTCCACTGTCGGGCTGCACTGTCCCAGAACAGCCACAGGGGGGCGCAGTAGACTGGGACCAAACACAGTGGCCAGGTTCATCAGAGGCATCTTGTTCacatgctgtctgtctgacacTCTTttgaggtggtggaggaggaacagGAAGGTGTTTTGGTTGACGGGGGGACAGGACTGGAGCAGAGACAACATGGTCACACTCCTGGAGCTCAGGTCTGGAATGTCCAACGCCTTGGTGAAGCTCTGGAACAGTTCTGTTGGTATGAGAGGTTCAGGGAGTTCTCTGAAGTAGAGCTTCAGTATACCTGAGACAGCATTCACATCTACACACCTCAACCTGGACACTGCCTCAcgcagacTGGTGTTGAAAGCAGTCTTGAGGTTGGTGATGTCACTGGTTGCTGCTGATAGCCTATAGATGCCCACCTCCTCCAGTCCTCTCcgctccacctcctccacacagCAACGCACCACATGTGGCACCAGGACACCCTCTTGTTGTGCCACAGCTCCAATGGGCATGCAGAAGATGGACTGTTGCTGGGCAGGGGTCAGACAGGGCGGGTCTAGAGGATGAGGGCAGTACTTTAGAGACATTGTCACCTCCACCTGGCCTAGAGAGAGGGTCTGTCTCCTCCATCGCTTCTGTAGGAGGCCTGGGTCCAGCTAGAACACATTCAGATGAACAGGTGACCACACAGGtgtacgcacacgcacgcacgcacacacaggatACACTTTTAAACagatacaggcacacacaccttCTGAACATTGAAGAACACACACATCTAGACACAGATGCACAGATGCAGACACACACCTGTATAGAGGTCTTGCAAAGGACTCGGTCCTCACagctctctccttcctctggcTGCAACACACACAGCACCCTGAGGTTCTGAGCCCCATCCACCTGGAAGGAGAACTCCTGAGGACCAACACAAGACACCGTTGAAGAGTAGTATTGATGACGTACGGGTAGCATGGCTATGTTCAAAAGTTATTTTAAAAGACCAAATCGAGTATAAAGCATCCTCACTGAAATACCACTGAAAAGCATCATCATAGTGATGTACATCGTCATGCAATGCAGGACAATTACATGTAG

Function

NR:

description
active breakpoint cluster region-related protein-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU888048 True 1327 lncRNA 0.51 6 20219043 20223327

Neighbor

gene id symbol gene type direction distance location
LOC110531712 LOC106577641 coding upstream 7805 20186727 ~ 20254184 (+)
LOC110532969 NA coding upstream 45093 20166595 ~ 20173950 (+)
LOC110531706 naa38 coding upstream 136959 20079382 ~ 20082084 (+)
LOC110531703 LOC106577651 coding upstream 198614 20009183 ~ 20090543 (+)
LOC110533004 NA coding upstream 272521 19942675 ~ 19946522 (+)
LOC110532972 LOC106577640 coding downstream 16430 20239757 ~ 20247172 (+)
LOC110531716 LOC106577637 coding downstream 56747 20280074 ~ 20282985 (+)
si:ch73-335l21.4 rn182 coding downstream 111176 20334503 ~ 20336164 (+)
LOC110531718 LOC106577634 coding downstream 113094 20336421 ~ 20341732 (+)
acap1 cenb1 coding downstream 195365 20418692 ~ 20455030 (+)
G779405 NA non-coding upstream 11760 20207061 ~ 20207283 (+)
G779404 NA non-coding upstream 12203 20206626 ~ 20206840 (+)
G779352 NA non-coding upstream 74208 20138277 ~ 20144835 (+)
G779351 NA non-coding upstream 80926 20135564 ~ 20138117 (+)
G779350 NA non-coding upstream 84232 20134374 ~ 20134811 (+)
G779446 NA non-coding downstream 78428 20301755 ~ 20303563 (+)
G779465 NA non-coding downstream 101170 20324497 ~ 20325034 (+)
G779469 NA non-coding downstream 104921 20328248 ~ 20328472 (+)
G779478 NA non-coding downstream 115199 20338526 ~ 20352737 (+)
G779520 NA non-coding downstream 185888 20409215 ~ 20409877 (+)
G779291 chd3 other upstream 178760 20039611 ~ 20040283 (+)
LOC110531697 NA other upstream 326596 19876221 ~ 19914138 (+)
LOC110531694 LOC106577663 other upstream 394437 19817663 ~ 19824606 (+)
G779964 NA other downstream 878252 21101579 ~ 21102271 (+)
G783405 LOC106577615 other downstream 2820680 23044007 ~ 23067530 (+)
gba3 LOC106577614 other downstream 2882144 23105173 ~ 23111380 (+)
LOC110531760 LOC106577603 other downstream 3542378 23765275 ~ 23780276 (+)
LOC110531761 LOC106577604 other downstream 3579259 23802151 ~ 23804811 (+)

Expression


Co-expression Network