G779446


Basic Information

Item Value
gene id G779446
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 20301755 ~ 20303563 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU888093
TCAGTCTATTACACATTTATTCTCAAATACAGAAACAAAAGTGACAATAATGAAATCAAACCAAAAAAATGACACCCCAATGTGACACTGCTATACTTGTGAAACTATTGACTTCATTTAGCACCTTTATGGTTCGGTTATACATCCTCATCTCTTGTGGACAGATATCTGCATTTTGTTCTGGGTTAAACGAGATtatcatcaatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatattcactcgTACAAAATGGACACTTACGTGCGTCAGTAACATACAAAATATGAGGAGGATCACAGTTATTTAAAGAGAGAAAACTCATGATTCAATCCCAAAAGTACCGTTTTGGTTtgccctcttcttcctccaagTACCGTTTCCTATACCCCATATAGGAAATACATGGCACCCATTCTTGTCATTTGAGGTATCTATCCTCTGAATACTAGACAGAAGTTGGCCTGTATCTTGCATTTAAAACTAATTGGCACACAAATTCATACAAAATGGGATACTTTACGTAATGTCCCACCATGTTCATAAATCAATGAAAACATGATGCATTTCACCTTCTCAAATGTCTTCTTCCCTATAGAAAATAAGAGCAAGTGGCGCCCTCTACTGTTCTAGTCCTCAGGACACTTGGCGACGACTCTTCATTTGGCCCGTTAATATGTTACTTCGGTCAATTCAATGAAAGACCACTACTGTTCCTTACACccagccaatcagtcagtcagtcccaggtAGGAAAAACAAACACGATGCTAAAAGGGAAATCAGTTAGAAAACACACAACAGCTTCACAGATGGTGTGAGAGGCAGAACTAAACCAATATACATGCTTGAAATCAAACAAGAGTTGCGGCTTATCTGATATGGAGTCCAGCAACATGTTTTGGAGTCATAAGATATGTGGAACGTTGTGGGGGGAGTTGCTGCTCCTAGATCTGACCTCTTGATTGCAGGTCTGTCCAGCTAAACGGTTTGGAGGGAAAACAATGAGACTTGAAAACATGCCAGTATATTTAAGAGGGAAGCCAGACGTTATGCATTTCACGTCTTTTACGTTGCTGTGCCAAAATTCCTGACTCACTGTTGAACCCAGTTTTTACCAGACTAGAAATGAACGACACCAATCTACTAGGGCCTAATCAGACCACAAGTTAATTACCACCAGACTAGAACAGTCTGTCATCCAGAGAGTGGAATACTCCTAGACATCACACGAATGGTCACTCAcctcacaagcacacacacacacacaatcagactACATGACATCCACAAAGAACTCGCTGGGGTTGCCCATTGCTAGGTGGAAGGACTGGCGCGAGGCGGTCAGCTCAGGGGGCACAGAGCCCAGGTCACGGGTTGGGGGGGCCCCGGGTGGTCCTCCAGGGACAGCGGAGGGGCCCATGCCTGGGTGCATGGGGACCGAGGGATGGTGCTGGTGGAGGTGTCCCATGTTTGGGTGTCCCATGTGTGGGTGTTGGggcaccatcatcaccatcataggGTTGTAGGGCATGGGCATCCCGGGGGGGTAGGGCGACATGTGGGGGGGCATGCGGTGATGATGCGAGCGCTGTGATGTGTGGCTGTGTTCGCTGGGTGTGGCTGAGCCGTGGCCACGCCTCAGGCTGCTGCGGACAGAGTATTCCGATTCGCTGCCGCTGCCCGagccctccccttcccctccagaGGGGGACTTTTCTCCT
>TU888091
actcgTACAAAATGGACACTTACGTGCGTCAGTAACATACAAAATATGAGGAGGATCACAGTTATTTAAAGAGAGAAAACTCATGATTCAATCCCAAAAGTACCGTTTTGGTTtgccctcttcttcctccaagTACCGTTTCCTATACCCCATATAGGAAATACATGGCACCCATTCTTGTCATTTGAGGTATCTATCCTCTGAATACTAGACAGAAGTTGGCCTGTATCTTGCATTTAAAACTAATTGGCACACAAATTCATACAAAATGGGATACTTTACGTAATGTCCCACCATGTTCATAAATCAATGAAAACATGATGCATTTCACCTTCTCAAATGTCTTCTTCCCTATAGAAAATAAGAGCAAGTGGCGCCCTCTACTGTTCTAGTCCTCAGGACACTTGGCGACGACTCTTCATTTGGCCCGTTAATATGTTACTTCGGTCAATTCAATGAAAGACCACTACTGTTCCTTACACccagccaatcagtcagtcagtcccaggtAGGAAAAACAAACACGATGCTAAAAGGGAAATCAGTTAGAAAACACACAACAGCTTCACAGATGGTGTGAGAGGCAGAACTAAACCAATATACATGCTTGAAATCAAACAAGAGTTGCGGCTTATCTGATATGGAGTCCAGCAACATGTTTTGGAGTCATAAGATATGTGGAACGTTGTGGGGGGAGTTGCTGCTCCTAGATCTGACCTCTTGATTGCAGGTCTGTCCAGCTAAACGGTTTGGAGGGAAAACAATGAGACTTGAAAACATGCCAGTATATTTAAGAGGGAAGCCAGACGTTATGCATTTCACGTCTTTTACGTTGCTGTGCCAAAATTCCTGACTCACTGTTGAACCCAGTTTTTACCAGACTAGAAATGAACGACACCAATCTACTAGGGCCTAATCAGACCACAAGTTAATTACCACCAGACTAGAACAGTCTGTCATCCAGAGAGTGGAATACTCCTAGACATCACACGAATGGTCACTCAcctcacaagcacacacacacacacacacacacaatcagactACATGACATCCACAAAGAACTCGCTGGGGTTGCCCATTGCTAGGTGGAAGGACTGGCGCGAGGCGGTCAGCTCAGGGGGCACAGAGCCCAGGTCACGGGTTGGGGGGGCCCCGGGTGGTCCTCCAGGGACAGCGGAGGGGCCCATGCCTGGGTGCATGGGGACCGAGGGATGGTGCTGGTGGAGGTGTCCCATGTTTGGGTGTCCCATGTGTGGGTGTTGGggcaccatcatcaccatcataggGTTGTAGGGCATGGGCATCCCGGGGGGGTAGGGCGACATGTGGGGGGGCATGCGGTGATGATGCGAGCGCTGTGATGTGTGGCTGTGTTCGCTGGGTGTGGCTGAGCCGTGGCCACGCCTCAGGCTGCTGCGGACAGAGTATTCCGATTCGCTGCCGCTGCCCGagccctccccttcccctccagaGGGGGACTTTTCTCCT
>TU888092
actcgTACAAAATGGACACTTACGTGCGTCAGTAACATACAAAATATGAGGAGGATCACAGTTATTTAAAGAGAGAAAACTCATGATTCAATCCCAAAAGTACCGTTTTGGTTtgccctcttcttcctccaagTACCGTTTCCTATACCCCATATAGGAAATACATGGCACCCATTCTTGTCATTTGAGGTATCTATCCTCTGAATACTAGACAGAAGTTGGCCTGTATCTTGCATTTAAAACTAATTGGCACACAAATTCATACAAAATGGGATACTTTACGTAATGTCCCACCATGTTCATAAATCAATGAAAACATGATGCATTTCACCTTCTCAAATGTCTTCTTCCCTATAGAAAATAAGAGCAAGTGGCGCCCTCTACTGTTCTAGTCCTCAGGACACTTGGCGACGACTCTTCATTTGGCCCGTTAATATGTTACTTCGGTCAATTCAATGAAAGACCACTACTGTTCCTTACACccagccaatcagtcagtcagtcccaggtAGGAAAAACAAACACGATGCTAAAAGGGAAATCAGTTAGAAAACACACAACAGCTTCACAGATGGTGTGAGAGGCAGAACTAAACCAATATACATGCTTGAAATCAAACAAGAGTTGCGGCTTATCTGATATGGAGTCCAGCAACATGTTTTGGAGTCATAAGATATGTGGAACGTTGTGGGGGGAGTTGCTGCTCCTAGATCTGACCTCTTGATTGCAGGTCTGTCCAGCTAAACGGTTTGGAGGGAAAACAATGAGACTTGAAAACATGCCAGTATATTTAAGAGGGAAGCCAGACGTTATGCATTTCACGTCTTTTACGTTGCTGTGCCAAAATTCCTGACTCACTGTTGAACCCAGTTTTTACCAGACTAGAAATGAACGACACCAATCTACTAGGGCCTAATCAGACCACAAGTTAATTACCACCAGACTAGAACAGTCTGTCATCCAGAGAGTGGAATACTCCTAGACATCACACGAATGGTCACTCAcctcacaagcacacacacacacacacacacaatcagactACATGACATCCACAAAGAACTCGCTGGGGTTGCCCATTGCTAGGTGGAAGGACTGGCGCGAGGCGGTCAGCTCAGGGGGCACAGAGCCCAGGTCACGGGTTGGGGGGGCCCCGGGTGGTCCTCCAGGGACAGCGGAGGGGCCCATGCCTGGGTGCATGGGGACCGAGGGATGGTGCTGGTGGAGGTGTCCCATGTTTGGGTGTCCCATGTGTGGGTGTTGGggcaccatcatcaccatcataggGTTGTAGGGCATGGGCATCCCGGGGGGGTAGGGCGACATGTGGGGGGGCATGCGGTGATGATGCGAGCGCTGTGATGTGTGGCTGTGTTCGCTGGGTGTGGCTGAGCCGTGGCCACGCCTCAGGCTGCTGCGGACAGAGTATTCCGATTCGCTGCCGCTGCCCGagccctccccttcccctccagaGGGGGACTTTTCTCCT

Function

NR:

description
segment polarity protein dishevelled homolog DVL-2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU888093 False 1781 lncRNA 0.45 2 20301755 20303563
TU888091 False 1491 lncRNA 0.49 2 20302053 20303563
TU888092 True 1489 lncRNA 0.49 2 20302053 20303563

Neighbor

gene id symbol gene type direction distance location
LOC110531716 LOC106577637 coding upstream 18770 20280074 ~ 20282985 (+)
LOC110532972 LOC106577640 coding upstream 54583 20239757 ~ 20247172 (+)
LOC110531712 LOC106577641 coding upstream 90517 20186727 ~ 20254184 (+)
LOC110532969 NA coding upstream 127805 20166595 ~ 20173950 (+)
LOC110531706 naa38 coding upstream 219671 20079382 ~ 20082084 (+)
si:ch73-335l21.4 rn182 coding downstream 30940 20334503 ~ 20336164 (+)
LOC110531718 LOC106577634 coding downstream 32858 20336421 ~ 20341732 (+)
acap1 cenb1 coding downstream 115129 20418692 ~ 20455030 (+)
trip6 LOC106577628 coding downstream 228382 20531945 ~ 20539559 (+)
LOC118936359 LOC106577628 coding downstream 237353 20540916 ~ 20550011 (+)
G779407 LOC106577639 non-coding upstream 78428 20219043 ~ 20223327 (+)
G779405 NA non-coding upstream 94472 20207061 ~ 20207283 (+)
G779404 NA non-coding upstream 94915 20206626 ~ 20206840 (+)
G779352 NA non-coding upstream 156920 20138277 ~ 20144835 (+)
G779465 NA non-coding downstream 20934 20324497 ~ 20325034 (+)
G779469 NA non-coding downstream 24685 20328248 ~ 20328472 (+)
G779478 NA non-coding downstream 34963 20338526 ~ 20352737 (+)
G779520 NA non-coding downstream 105652 20409215 ~ 20409877 (+)
G779291 chd3 other upstream 261472 20039611 ~ 20040283 (+)
LOC110531703 LOC106577651 other upstream 278287 20009183 ~ 20090543 (+)
LOC110531697 NA other upstream 409308 19876221 ~ 19914138 (+)
LOC110531694 LOC106577663 other upstream 477149 19817663 ~ 19824606 (+)
G779964 NA other downstream 798016 21101579 ~ 21102271 (+)
G783405 LOC106577615 other downstream 2740444 23044007 ~ 23067530 (+)
gba3 LOC106577614 other downstream 2801908 23105173 ~ 23111380 (+)
LOC110531760 LOC106577603 other downstream 3462142 23765275 ~ 23780276 (+)
LOC110531761 LOC106577604 other downstream 3499023 23802151 ~ 23804811 (+)

Expression


Co-expression Network