G779478


Basic Information

Item Value
gene id G779478
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 20338526 ~ 20352737 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU888140
gtataatgatcatgctgtttaatcagcttcttgatatgccacacctgtctggtggatggattatcttggcaaaggagaaatgctcactaacagggatgtaaacaaatctgtgcacACAATTTTAGAGATGTATTTatcaatgttttatttcacctttatttaactaggcaagtcagttaagaacaaattcttatttacaatgatggcctaccccagccaaaccctaacccgaacaacgctgggccaattgtgcgccgccctacgggactcccaatcacggccggttgtgacacagcctgaaatcaaaccagggtctgtagtgagatgcagtaccttagaaccctgagccactcgggagctaaagaataagctttttgtgtgtatggaacatttctggtatcttttatttcagctcatgaaatatgggaccaacactttacatgttgtgttttatattttgttcagtatagataggCTAAGATTACGGACATTGTGGAGTAATCTATTTCTGTGTTATAATTAATACAAGTATTTGAAAGAACTATTTATGGTTAAATATAGTTCCATACAATTGTTTTTTTTAGTTGTCTTTATTCGGCAACAAGTGCCAAGTGTCTCTCTGTGCATTAAATACATATTGACCAGAGCATATTGTGTAGTATGTGAGCATGTTGATATGTGATATAGAATAACTCTGCATTCTTGGATGAGAGGTgtgggcagagagagatagagatattgaaagagagtggagagagagagaaacatctgtCAGCTACATTGAAGCGGTGAGCATAAAGTCATTAGAAGCTATGCCGCTAACATCTCTCACAGTAACACAGTCAGGCCAGCTAAttgctattattattatcatcaccatcattatTATTCAAAATATATACCAGTACCAGTGCTCTCTTCTTTGTCCGTTACATCTGGTCGCCACAACATATTCTACTTCAAAAGGAGCACAACAATTGAAGCTTCTTCAGTTCCTTAGTCAATGCTAAGTTCTTTGTAAAATGGCTACAATCAAAAAATGAGGCACTTTTGAAAAGATATATACTTCTATATATTTCCTTATAATACTATGTATATTCAGCCATCATTAGAGGAAATCCTGCTTTTTGATTGGTTAATTGTGTTTTCATTTAGGTTGATGATCGAAAAATATCATTGGCTCCCCGTCCGCAGTCGGTCTTTATTCTTCTCTCTTATTGGTTGAGAGTCCTTCCTTCACGGGCTATAATCGGCACGCATCCCCATTGGTATCACAACCAATCAACTGAAAGCAACGAAATAAAGGTTTTCCATCAGTCTTTCCAAAGTGCTTCAGGGGCGTGACCAGTCcaactcctctctcttcccattgGTTGTCACAAAAGGATGAGGAGCTTAGGGATCTCCAAGTCTCCTGTAATTCCCCCCCCATAATTCCAAGGCCAGGGCGTAGACATCAG

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU888140 True 1460 lncRNA 0.39 2 20338526 20352737

Neighbor

gene id symbol gene type direction distance location
si:ch73-335l21.4 rn182 coding upstream 2362 20334503 ~ 20336164 (+)
LOC110531716 LOC106577637 coding upstream 55541 20280074 ~ 20282985 (+)
LOC110532972 LOC106577640 coding upstream 91354 20239757 ~ 20247172 (+)
LOC110531712 LOC106577641 coding upstream 127288 20186727 ~ 20254184 (+)
LOC110532969 NA coding upstream 164576 20166595 ~ 20173950 (+)
acap1 cenb1 coding downstream 65955 20418692 ~ 20455030 (+)
trip6 LOC106577628 coding downstream 179208 20531945 ~ 20539559 (+)
LOC118936359 LOC106577628 coding downstream 188179 20540916 ~ 20550011 (+)
LOC110531733 LOC106577625 coding downstream 939964 21292701 ~ 21355731 (+)
LOC118966017 NA coding downstream 1077630 21430367 ~ 21431314 (+)
G779469 NA non-coding upstream 10054 20328248 ~ 20328472 (+)
G779465 NA non-coding upstream 13492 20324497 ~ 20325034 (+)
G779446 NA non-coding upstream 34963 20301755 ~ 20303563 (+)
G779407 LOC106577639 non-coding upstream 115199 20219043 ~ 20223327 (+)
G779520 NA non-coding downstream 56478 20409215 ~ 20409877 (+)
G779563 NA non-coding downstream 129760 20482497 ~ 20482703 (+)
G779574 NA non-coding downstream 143140 20495877 ~ 20496206 (+)
G779576 NA non-coding downstream 144774 20497511 ~ 20497775 (+)
LOC110531706 naa38 other upstream 256472 20079382 ~ 20082084 (+)
G779291 chd3 other upstream 298243 20039611 ~ 20040283 (+)
LOC110531703 LOC106577651 other upstream 315058 20009183 ~ 20090543 (+)
LOC110531697 NA other upstream 446079 19876221 ~ 19914138 (+)
LOC110531694 LOC106577663 other upstream 513920 19817663 ~ 19824606 (+)
G779964 NA other downstream 748842 21101579 ~ 21102271 (+)
G783405 LOC106577615 other downstream 2691270 23044007 ~ 23067530 (+)
gba3 LOC106577614 other downstream 2752734 23105173 ~ 23111380 (+)
LOC110531760 LOC106577603 other downstream 3412968 23765275 ~ 23780276 (+)
LOC110531761 LOC106577604 other downstream 3449849 23802151 ~ 23804811 (+)

Expression


Co-expression Network