G779724 (LOC106577627)


Basic Information

Item Value
gene id G779724
gene name LOC106577627
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 20730085 ~ 20742513 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU888410
CGGGTTGTTGGCCATGCAGCGAGTCCCAAACCCAGGATTATTCACCAAAGAGTCCGCCACCCGAGCAACCTCTGTGTTATTTGGCGGTCCATCACTGTAGAATGTCGTTTGGGGCAGTCCATACATCCAAGGCTGCAACTCCAGGTTGGGGTACTCCGCAAAAGGCGGGACGATGACGGAGAAGATGAGAGACAGGCAGACGAAGACAGCAGGCAGAATCACCTGAGCAATGAGGCCTTTGCGGCTCCTGCGTGCGTGGTGAAAGCGTTTGATGAAGAGGGCCAGGAACTGTCTCCGGATCAGTTCCCATCCCGTGATCACACTGGAGCCCTTCCCATTCACATTGGCCACTCTCTCCACATCCTCCACTCTGCTAGTGAACTTCACTTTCATCTCG

Function

NR:

description
ATP-binding cassette sub-family A member 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU888410 True 397 lncRNA 0.55 4 20730085 20742513

Neighbor

gene id symbol gene type direction distance location
LOC118936359 LOC106577628 coding upstream 180074 20540916 ~ 20550011 (+)
trip6 LOC106577628 coding upstream 190526 20531945 ~ 20539559 (+)
acap1 cenb1 coding upstream 275116 20418692 ~ 20455030 (+)
LOC110531718 LOC106577634 coding upstream 388353 20336421 ~ 20341732 (+)
si:ch73-335l21.4 rn182 coding upstream 393921 20334503 ~ 20336164 (+)
LOC110531733 LOC106577625 coding downstream 550188 21292701 ~ 21355731 (+)
LOC118966017 NA coding downstream 687854 21430367 ~ 21431314 (+)
LOC110531736 NA coding downstream 852519 21595032 ~ 22190303 (+)
LOC118966179 NA coding downstream 1923863 22666376 ~ 22667896 (+)
sec24d LOC106577619 coding downstream 1985586 22728099 ~ 22756998 (+)
G779719 NA non-coding upstream 7837 20721597 ~ 20722248 (+)
G779689 LOC106577627 non-coding upstream 49015 20669394 ~ 20681070 (+)
G779599 NA non-coding upstream 206085 20523635 ~ 20524000 (+)
G779597 NA non-coding upstream 207207 20522439 ~ 20522878 (+)
G779596 NA non-coding upstream 207665 20522124 ~ 20522420 (+)
G779846 NA non-coding downstream 129232 20871745 ~ 20871955 (+)
G779849 NA non-coding downstream 132511 20875024 ~ 20875470 (+)
G779851 NA non-coding downstream 134929 20877442 ~ 20877751 (+)
G779876 NA non-coding downstream 174615 20917128 ~ 20917331 (+)
G779886 NA non-coding downstream 188381 20930894 ~ 20933138 (+)
LOC110531706 naa38 other upstream 648031 20079382 ~ 20082084 (+)
G779291 chd3 other upstream 689802 20039611 ~ 20040283 (+)
LOC110531703 LOC106577651 other upstream 706617 20009183 ~ 20090543 (+)
LOC110531697 NA other upstream 837638 19876221 ~ 19914138 (+)
LOC110531694 LOC106577663 other upstream 905479 19817663 ~ 19824606 (+)
G779964 NA other downstream 359066 21101579 ~ 21102271 (+)
G783405 LOC106577615 other downstream 2301494 23044007 ~ 23067530 (+)
gba3 LOC106577614 other downstream 2362958 23105173 ~ 23111380 (+)
LOC110531760 LOC106577603 other downstream 3023192 23765275 ~ 23780276 (+)
LOC110531761 LOC106577604 other downstream 3060073 23802151 ~ 23804811 (+)

Expression


Co-expression Network