XLOC_027001 (bcap29)


Basic Information

Item Value
gene id XLOC_027001
gene name bcap29
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 2655358 ~ 2666310 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00053271
GCGCGTGTAAGTGACGTCACTGGAGTGAGACGGGACGGCAGTTGCGCGTTTGTCAGACTTTAGTGTAGTTTTCCAGAATTGTGTCTTTCGTCTGAAATTTGTCAggagattttgtttaaatCTGAAATAAAATGACGCTGCAGTGGACGGCGGTTGCAACTTTCCTGTATGTAGAGATTGCCGTTCTTATCTTCTTTTGTCTGCCGTTCATTTCTGCTAAAAGATGGCAGAAGATTTTCAAGTGGAGCATCTGGAGCCGGCTTTCCCAGTTCTGGAACAAGGGCTTCCTCGCCATGATAATAATCCTCATCGTTCTCTTTCTTGATGCTCTCCGTGAGGTCAGAAAATACTCGAACTCGGATCAGTCCAAAGATGCCAAGCTGCACCCCAACATGTTCGACCACATGCACATGAAGCTCTTCCGGGCTCAGAGGAACCTCTACATCTCCGGCTTCTCGCTCTTCCTCTGGCTggTGATGAGGAGGGTGGTCACTCTGATCAGTCAGCTGGCCACAGCTGCAGATTCTTGCGTAGATCTACAGAACCAGGTCGAAACTACCAATAAAGCTGCCAAGAAGTACATGGAGGACAACCAGATCCTCAaacagGCTCTTGCAGATGCCAAAGAAGGAGGACAAAAAGCAGATCCAGAGGAGAGCAAACGGCTGAAGGAGGAGCTGCAGAGACTGAAGGAGGAGCTGAAGACCAGCGCAgatgCTCTGAAAAAGTCAAAGTCTGATTTAGACACCATGAAGAAACAAAGTGACGGACTGACCAAAGAGTACGAGCGGCTGCTTCAGGAGCACCAGCAGCTGCAGAATCAGATGGACAGCGGAGATAAAAAAGAAAACTAGAGGAACGGACACACCACACAATGTAAATCTGCACGATAATCATCATTACGCTCAGTTCATCCTCAACACACTCACCTGACACTCCTGATGATGACTTCCTGTCAGGTCACATGATCAGAGCGGTTTCACAGTTTTCTAGCATCGTTGTTTAATAAAATGTGCAAAACTTCGTCATTTAGCTCGTCACTGGAGCGAACCTGTTAAAATGACAACTGTATACCTTATTTAAGTCTTTTTTAATAGTAATGTTTCCCCTAATATGGACAGTAATGGGTATAGAgttgttattttaaagaaactcTTCACCTTTTTGTGTaattaggctcattttacagctcttcTAGAGTTAATCAGGtgaattttactatttttttgtaatctattcagctgatctctgggatTCGCaggggcacttttagcttagcttagcataaatgattgaattggattagaccattagcgtctCGCTCAAGTAAAAGCCCAATAATTTAGATAATTTTtctgtttaaagcttgactctcttttatttacattgtgtACCAAGACTGGTGGAAAATGTAAAGTTATTTTTTAGGCTGATATAGCTAGTAaaaacttagcttagcatacatcattgaatcggactagaccattagcatctcgatcAAAAATGACCAACAAAA
>TCONS_00053272
GAGGAGAGCAAACGGCTGAAGGAGGAGCTGCAGAGACTGAAGGAGGAGCTGAAGACCAGCGCAgatgCTCTGAAAAAGTCAAAGTCTGATTTAGACACCATGAAGAAACAAAGTGACGGACTGACCAAAGAGTACGAGCGGCTGCTTCAGGAGCACCAGCAGCTGCAGGTCAAACACTAACAACACACACCTTTTACAGTACTTCACATCAAATTAACATTATTGAACAGTAATTCAGTTCTGTCATATAAATAACAACAAGCTAGATTAAATAAGTTAGAAATAAGaagacatttaaataagaaatGAACAGAGAATGGAGTACTTATTACCAAAGTTGCTATGCATGTAGACAGTGCTGCTGAAGTCTCACAAACTAATTTGataggagcacatgatatgatggatcgcggctggtctctcatctgtaatcattagta

Function

symbol description
bcap29 Predicted to be involved in endoplasmic reticulum to Golgi vesicle-mediated transport and protein localization to endoplasmic reticulum exit site. Predicted to act upstream of or within intracellular protein transport and vesicle-mediated transport. Predicted to be located in endoplasmic reticulum and membrane. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum membrane. Orthologous to human BCAP29 (B cell receptor associated protein 29).

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport biological_process
GO:0016192 vesicle-mediated transport biological_process
GO:0015031 protein transport biological_process
GO:0070973 protein localization to endoplasmic reticulum exit site biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-050522-468 Predicted to be involved in endoplasmic reticulum to Golgi vesicle-mediated transport and protein localization to endoplasmic reticulum exit site. Predicted to act upstream of or within intracellular protein transport and vesicle-mediated transport. Predicted to be located in endoplasmic reticulum and membrane. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum membrane. Orthologous to human BCAP29 (B cell receptor associated protein 29).

Ensembl:

ensembl_id ENSDARG00000016231

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00053271 False 1516 mRNA 0.43 8 2655358 2666310
TCONS_00053272 True 440 lncRNA 0.40 2 2662709 2663627

Neighbor

gene id symbol gene type direction distance location
XLOC_027000 dus4l coding upstream 12823 2637947 ~ 2642535 (+)
XLOC_026999 gpr22a coding upstream 31871 2619132 ~ 2623487 (+)
XLOC_026998 NA coding upstream 66955 2588157 ~ 2588403 (+)
XLOC_026997 BX072538.1 coding upstream 73327 2581916 ~ 2582031 (+)
XLOC_026996 zdhhc17 coding upstream 146781 2482046 ~ 2508577 (+)
XLOC_027002 NA coding downstream 236037 2902347 ~ 2904041 (+)
XLOC_027003 CABZ01085700.1 coding downstream 621509 3287819 ~ 3290445 (+)
XLOC_027004 NA coding downstream 638868 3305178 ~ 3307854 (+)
XLOC_027005 NA coding downstream 643175 3309485 ~ 3338940 (+)
XLOC_027006 nampta coding downstream 692073 3358383 ~ 3385452 (+)
XLOC_026995 NA non-coding upstream 300169 2352772 ~ 2355189 (+)
XLOC_026994 NA non-coding upstream 305977 2345648 ~ 2349381 (+)
XLOC_026988 NA non-coding upstream 668500 1983663 ~ 1986858 (+)
XLOC_027008 NA non-coding downstream 738559 3404869 ~ 3413155 (+)
XLOC_027009 NA non-coding downstream 755161 3421471 ~ 3422463 (+)

Expression


Co-expression Network