XLOC_027003 (CABZ01085700.1)


Basic Information

Item Value
gene id XLOC_027003
gene name CABZ01085700.1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 3287819 ~ 3290445 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00053273
caagtttaattaaaaataggtATTATTAAATTCATAAATAGCACATTAATCTATTAATATAAATGACTTTAcctgttcttttgtttatttcagGTGGAGTTTGAAGGCCTGAAGCATGAAATTAAAGTTCTGATGGAGGAAACTGCTGTGCTGAACAGCCAATTAGAAGATGCGCTGCGTCTGAAGGACATCTCCGAGAGCCAATTAGAGGAGGCGTTGGATGCCCTGAAAAACGAGCGCGAGCAGAAAAACATTTTGCGTAAAGAATTAGCCCACCATCTAACCGTGTGCGACGGGAATTTTAGCTCAGGCTGTGCTCACTTGATCGCATTGAGCTCAGCACCCCCTAGTGGCAGCGCAACACCAACAACTGCTACATCGCCCAGTAGTGAAGACGGCGGGAAATGTAACGGGCATCTGCTTCAGGGCGCAGCAGGTTCAGTGTTGAACCGTCTGAACGGAGACTTCAGGGCGTCCAGTTTGAGGAAGAGTGAGATTTTGACCCCTGATCTGTTTAGTGAGCTCAATGGCCCAGAGATCCTGAAACTCAGACAACAGCTTCAGCAGGTGGAACGGGAAAAAGCGTCTCTGCTCAACACCCTGCAGGAATCCCAGGCAGTGCTCCGTCATACGCAGGGGGCTCTAACAGAGCAGCACGAGAAGGCCAGCCGCTTAGGGGAGCGTTTCCGAAAACTCCGCCGCCAGCGTAGCAGTAAAGtcaaggaggaagaggaggaggaagaagaagacgAGCCTCTGTTCCTGCCTGTGGGCCAGGAGGGTCCGAGTCTGGAGCTGCTGCAGAGTAAATACAGGGTGGCCGTGACGGAGGTGGTCGGACTGAAGGCGGAGCTAAAGGAAGTGAAAGACAGATATAACGAATCAGTGGAAGCCAGAGCTCGGGTTGAAGAACAAGGAAAGGCACAAATGCAGATGCTGGAGATACAAGTAGCAAAGTTAGAACGAAGTTGCAGGGAAGGGCGGGAGAAAGCAGTGAATCTGGAGCGTGAGCTGCAGGCAGCCAATAACACAGCATTGGAGACGCATGGAATTCTGGGAAATGCTCAAGATGAGTTGGCGATATTCAGTGAGGAGTTGGCGCAATTATACCACCACGTCTGCCTGTGCAACAATGAGACACCAAATCGCGTTACTTTGGATTATTACCGGCAGGGCCGGACCCTGACGCGCATTTCCACTTCTGGCCACAAGGGGCAGCAGGACGACCACCGTGTACTGTTGACCCCTCGACTTGCACGCCGATTAGCAGCGATTAACGAGTCCCGGAGCCCGTCAGACTCTCCATCCAAAGACCCTCTCACTTCAGAGCAGAGCCCGGTCCGCACCCCTTTGGGTTCTCCCAATGTTAGTGCCTCttcctcatcatcatcttcatccccAGCTCCAGAATCATCCACAGGCTCAGAGCTCCGCCGGGAGCCCACCAACATCCACCACCTCAACGCAATCATCCGCGATCAGATCAAGCACTTGCAGAAAGCCGTGGACCGCTCGCTCCAGCTGTCCCGCCAGAGAGCAGCCGCCAGTGAACCGCCCCGCTGATGGACAAAGACAAGGAGGCCTGCATGGAGGAGATCCTCAAACTCAAGTCTCTCCTGAGCACAAAGAGGGAGCAGATTGCAACCTTGCGTCTTGTGCTCAAAGCCAACAAGCAGGTAGGCTAATCAGCTCTATTTATTACCCAGCATCCCTATTGATTGGCCTGAGAGTATTGAACCA

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000098551

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00053273 True 1740 mRNA 0.52 2 3287819 3290445

Neighbor

gene id symbol gene type direction distance location
XLOC_027002 NA coding upstream 383778 2902347 ~ 2904041 (+)
XLOC_027001 bcap29 coding upstream 621509 2655358 ~ 2666310 (+)
XLOC_027000 dus4l coding upstream 645284 2637947 ~ 2642535 (+)
XLOC_026999 gpr22a coding upstream 664332 2619132 ~ 2623487 (+)
XLOC_026998 NA coding upstream 699416 2588157 ~ 2588403 (+)
XLOC_027004 NA coding downstream 14733 3305178 ~ 3307854 (+)
XLOC_027005 NA coding downstream 19040 3309485 ~ 3338940 (+)
XLOC_027006 nampta coding downstream 67938 3358383 ~ 3385452 (+)
XLOC_027007 sypl1 coding downstream 99421 3389866 ~ 3398385 (+)
XLOC_027008 NA coding downstream 114424 3404869 ~ 3413155 (+)
XLOC_026997 BX072538.1 non-coding upstream 705788 2581916 ~ 2582031 (+)
XLOC_026995 NA non-coding upstream 932630 2352772 ~ 2355189 (+)
XLOC_026994 NA non-coding upstream 938438 2345648 ~ 2349381 (+)
XLOC_027009 NA non-coding downstream 131026 3421471 ~ 3422463 (+)
XLOC_027013 NA non-coding downstream 226258 3516703 ~ 3516910 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000067_00006588_00026521 NA coding CI01000067 null 5856 ~ 26867 (+)