XLOC_027007 (sypl1)


Basic Information

Item Value
gene id XLOC_027007
gene name sypl1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 3389866 ~ 3398385 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00053276
CACATCAATACGAAACAAACGCATAATTTAACAGCGATTATCGCTCAATACATCAATTATTGAAATGATAAGttattttttgggtgatctgCTCCTTTAAGAGAATGAAGAGTTTAACGGAGCGCAGGAATGTAGAGGATCATATGACTGAAATATTTGCGGGACTTTTTGACGCGgagaaaaacttttatttattttacttcgtTCGATTGATAATTACTGTATAAATCAAACCCTTCACGCAATAGTTCATATCTTGCGCTGAACTCCGTTTCTCCTGTCATCTGGATTTACTCCGGTTTCTGTGGAGGAGGAGCAGCATcttttaccacacacacacacacacacacacacacacaccacgtcactctgttaaactttatttttttttaagcaaacttgAGCCTGCAAGATTTTCAAGCTCTTCCCTTTCTTCCTGGTGGATTTCTGGCTCGGTGGGAAAGATGCAGACTGGATTCAGATTGAACTTGAGCCCCGTTAAAGAGCCTCTGGGTTTCGTTAAAGTCCTGGAGTGGATCACTGCTGTGCTCGCGTTCGGGACCTGTGGGGGATTTTCCGGCAGAAATGTGCTCTCCGTCTTCTGCGATGGCAGCAATGAAACACTCACTGCCACTTTCACCTACCCATTCAGGTTAAACCATGAGCTGTTGGTGGAGCAGAACAGGACCCTCTGCAACCGCTCAGTGTCTGCCACTCATCTGGTGGGCGACTCCTCGTCCTCGGTGGAGTTTTTTGTGGCCGTCGCCGTCCTGGCCTTCCTTTACTCCATGCTGGCGCTCATCGTCTATCTGGGCTACATGCACGTCTACAGAGACTCAGACTTCGGCCCGATGTTTGATTTTGTGCTGACAGCGGTGTTTGCGTTCCTGTGGTTGGTGTGTTCGTCTGCATGGGCCAGAGGACTGCAGACGGTGAAGGACGCCACCAGTACCGCTGGCATGGAATCCACTTTAGCGCTCTGCAAGGACAGAGGTGTGAGATGTGAAGTCACAGAGTTTGCCAGCATGCGCTCACTCAATATATCTGTGGTGTTTGGATTCTTGAATCTGATCATATGGGCCGGGAATGCCTGGTTTGTGTATAAAGAGACGCGCTGGCACTCTCAGAAGGTCAACGCTCAGCAAACGCCAGGACgagctccagctccagctccCATCTAAACACAAACATCACACGCTTCAGCCTAATGAACAAtacagtcatttatagtaaataacagagtgtttttgaaCCAAGCTGCAGTCAAGTAGTTGAATGAATCTGTTGTGCTAATTCTTAAAAATGCTATGGTGATACAACGACTGACTAAATATAAACCAGTTACCCAGTTTAGCTGTTGTAGCCATGCTATAGtaaaacaactacagtaatataaacaaacgaTCCGACACTGGTTTTCTTCAGCTATAGG
>TCONS_00053277
ACCAGAAGTCCACTATATAgagacaaatcctgcatgttctCCTCAAAAATCTTAATATCTTTCAGAATGAAGATTGCAAAGGATGAGTAAAGGATCAGGAAATGTTCATTCTGGAAGTGAACTACTGCTTTAACTCGAGAGTACTGCCTCTGTGTGCTAGGATTTTGTGCTGACAGCGGTGTTTGCGTTCCTGTGGTTGGTGTGTTCGTCTGCATGGGCCAGAGGACTGCAGACGGTGAAGGACGCCACCAGTACCGCTGGCATGGAATCCACTTTAGCGCTCTGCAAGGACAGAGGTGTGAGATGTGAAGTCACAGAGTTTGCCAGCATGCGCTCACTCAATATATCTGTGGTGTTTGGATTCTTGAATCTGATCATATGGGCCGGGAATGCCTGGTTTGTGTATAAAGAGACGCGCTGGCACTCTCAGAAGGTCAACGCTCAGCAAACGCCAGGACgagctccagctccagctccCATCTAAACACAAACATCACACGCTTCAGCCTAATGAACAAtacagtcatttatagtaaataacagagtgtttttgaaCC

Function

symbol description
sypl1 Predicted to be located in membrane and synaptic vesicle. Predicted to be integral component of membrane. Predicted to be active in synaptic vesicle membrane. Orthologous to human SYPL1 (synaptophysin like 1).

GO:

id name namespace
GO:0030672 synaptic vesicle membrane cellular_component
GO:0008021 synaptic vesicle cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0017075 syntaxin-1 binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-110420-2 Predicted to be located in membrane and synaptic vesicle. Predicted to be integral component of membrane. Predicted to be active in synaptic vesicle membrane. Orthologous to human SYPL1 (synaptophysin like 1).

Ensembl:

ensembl_id ENSDARG00000077356

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00053276 False 1432 mRNA 0.46 5 3389866 3398385
TCONS_00053277 True 557 lncRNA 0.46 2 3396464 3398207

Neighbor

gene id symbol gene type direction distance location
XLOC_027006 nampta coding upstream 4414 3358383 ~ 3385452 (+)
XLOC_027005 NA coding upstream 50926 3309485 ~ 3338940 (+)
XLOC_027004 NA coding upstream 82012 3305178 ~ 3307854 (+)
XLOC_027003 CABZ01085700.1 coding upstream 99421 3287819 ~ 3290445 (+)
XLOC_027002 NA coding upstream 485825 2902347 ~ 2904041 (+)
XLOC_027008 NA coding downstream 6484 3404869 ~ 3413155 (+)
XLOC_027009 NA coding downstream 23086 3421471 ~ 3422463 (+)
XLOC_027010 atxn7l1 coding downstream 40125 3438510 ~ 3446758 (+)
XLOC_027011 znf800b coding downstream 56761 3455146 ~ 3475397 (+)
XLOC_027012 grm8a coding downstream 79664 3478049 ~ 3745093 (+)
XLOC_026998 NA non-coding upstream 801463 2588157 ~ 2588403 (+)
XLOC_026997 BX072538.1 non-coding upstream 807835 2581916 ~ 2582031 (+)
XLOC_027013 NA non-coding downstream 118318 3516703 ~ 3516910 (+)
XLOC_027014 NA non-coding downstream 415396 3813781 ~ 3815416 (+)
XLOC_027015 NA non-coding downstream 546331 3944716 ~ 3952419 (+)

Expression


Co-expression Network