XLOC_027009


Basic Information

Item Value
gene id XLOC_027009
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 3421471 ~ 3422463 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00057540
gctggacacggctccggaagctccagggggagaccgaactggtatccccccttcttcaggcgcgcctcacactcactcaccattCACACATATCGCAGAGTTCTGGCTGGGACCAATACCAGCAACCCCTGAAGCCGTGGGGCAGCGCTCTTACCACAGAGCCACAGATCTCCTGTCTGAACACCTGCTGGAACTGATGTTTGACTCGAGCTGAGCTGTGATTTTAATAGTAAACAAAGTAAAGTAACCTGTAAGCATGGTGTGAACCCATGTCTTCATTGTCATCTTATTCTCAGAGAGCACATGCTTGTCCACTCACCCACAATGAACTCTCTGTCTACTGTGGCATTTATGTGATTTTGTTGCATGTGATGAtcacaatttaacataattgttaatAGGATTCGAACTAACGACGTCATGATTTAAATCACAGCTCATTACTACTTGCACCACTGAGTCTGTGTAGCTACATGCTGTCTAATTGATTGTTCCATCATGTAGTGATTTTTGAAAACTACATTGCTACAAATGACCATTGCGCCCTCCTGTGATGATTTTTTGTAAACTACATCACAACAAATTGACTaatgcgccctcctgtggtgattttTATAAACTACATTGCAACAAATTGAATttattgcgccctcctgtggtgattttTGTAAACTACATTGCAACAAATTGACAttattgcgccctcctgtggtgattttTATAAACTACATTGCAACAAATTGACAttattgcgccctcctgtggtgagtTTCGTGAACTACATCAC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00057540 True 787 lncRNA 0.43 2 3421471 3422463

Neighbor

gene id symbol gene type direction distance location
XLOC_027008 NA coding upstream 8316 3404869 ~ 3413155 (+)
XLOC_027007 sypl1 coding upstream 23086 3389866 ~ 3398385 (+)
XLOC_027006 nampta coding upstream 36019 3358383 ~ 3385452 (+)
XLOC_027005 NA coding upstream 82531 3309485 ~ 3338940 (+)
XLOC_027004 NA coding upstream 113617 3305178 ~ 3307854 (+)
XLOC_027010 atxn7l1 coding downstream 16047 3438510 ~ 3446758 (+)
XLOC_027011 znf800b coding downstream 32683 3455146 ~ 3475397 (+)
XLOC_027012 grm8a coding downstream 55586 3478049 ~ 3745093 (+)
XLOC_027013 NA coding downstream 94240 3516703 ~ 3516910 (+)
XLOC_027014 NA coding downstream 391318 3813781 ~ 3815416 (+)
XLOC_027002 NA non-coding upstream 517430 2902347 ~ 2904041 (+)
XLOC_026998 NA non-coding upstream 833068 2588157 ~ 2588403 (+)
XLOC_027015 NA non-coding downstream 522253 3944716 ~ 3952419 (+)
XLOC_027017 NA non-coding downstream 637404 4059867 ~ 4063556 (+)
XLOC_027018 NA non-coding downstream 642855 4065318 ~ 4071401 (+)

Expression


Co-expression Network