G782791


Basic Information

Item Value
gene id G782791
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 22696769 ~ 22697184 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU891656
CCTTTTGACCAGTAATTGCAGGCAGTTGACGCAGGCGTCAATGAGAGCAATAGCTTCTGGGAGGGAAAGGTCACCGCAGGGTTCTCCATTCAGCGACACCACCTCATCCCCCTCACAAACTCCAGCCAGGGTCGCACGACCCCCCTCTTCCACCTACGGAATGACAAGCAGTGGTGAGTCCCCAGGACATGCCTCACAATAACTATTCACCTACACCTATTATTAAGGTTAGTGTATTTACTTTATGTAACTGAGGTAGTTTTGGCCAACCACAGTTGTTTGATGAGTAACATTGCCTGAGATCTGAAGGCTTGTGTTAGCTCACCGAGTTATTGCCTAGGACTTTATTGAAGCAGGCTAACACAGCCGTTTGCCACAAAAGATACCCAGGTTCAAACTCCACATGACTGTAGGTA

Function

NR:

description
synaptopodin-2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU891656 True 416 lncRNA 0.48 1 22696769 22697184

Neighbor

gene id symbol gene type direction distance location
LOC118966179 NA coding upstream 28873 22666376 ~ 22667896 (+)
LOC110531736 NA coding upstream 506466 21595032 ~ 22190303 (+)
LOC118966017 NA coding upstream 1265455 21430367 ~ 21431314 (+)
LOC110531733 LOC106577625 coding upstream 1341038 21292701 ~ 21355731 (+)
LOC118936359 LOC106577628 coding upstream 2146758 20540916 ~ 20550011 (+)
sec24d LOC106577619 coding downstream 30915 22728099 ~ 22756998 (+)
LOC110531753 LOC106577617 coding downstream 313501 23010685 ~ 23011526 (+)
gba3 LOC106577614 coding downstream 407989 23105173 ~ 23111380 (+)
LOC110531759 LOC106577602 coding downstream 1039115 23736299 ~ 23749171 (+)
LOC110531760 LOC106577603 coding downstream 1068091 23765275 ~ 23780276 (+)
G782716 NA non-coding upstream 108461 22584227 ~ 22588308 (+)
G782672 NA non-coding upstream 171560 22524455 ~ 22525209 (+)
G782666 NA non-coding upstream 182586 22513887 ~ 22514183 (+)
G782665 NA non-coding upstream 185151 22511326 ~ 22511618 (+)
G782580 NA non-coding upstream 264528 22432026 ~ 22432241 (+)
G782801 LOC106569888 non-coding downstream 16229 22713413 ~ 22713922 (+)
G782820 NA non-coding downstream 64680 22761864 ~ 22762522 (+)
G782821 NA non-coding downstream 65372 22762556 ~ 22762910 (+)
G782824 NA non-coding downstream 69069 22766253 ~ 22766486 (+)
G782825 NA non-coding downstream 70021 22767205 ~ 22767404 (+)
G779964 NA other upstream 1594498 21101579 ~ 21102271 (+)
LOC110531706 naa38 other upstream 2614715 20079382 ~ 20082084 (+)
G779291 chd3 other upstream 2656486 20039611 ~ 20040283 (+)
LOC110531703 LOC106577651 other upstream 2673301 20009183 ~ 20090543 (+)
LOC110531697 NA other upstream 2804322 19876221 ~ 19914138 (+)
G783405 LOC106577615 other downstream 346823 23044007 ~ 23067530 (+)
LOC110531761 LOC106577604 other downstream 1105402 23802151 ~ 23804811 (+)
LOC110531763 LOC106577738 other downstream 1136980 23834071 ~ 23839257 (+)

Expression


Co-expression Network