G782868


Basic Information

Item Value
gene id G782868
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 22823068 ~ 22848193 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU891737
gtattcggcccccttgaactttgcgaccttttgccacatttcaggcttcaaacataaagatataaaactgtatttttttgtgaagaatcaacaacaagtgggacacaatcatgaagtggaacgacatttattggatatttcaaaaaaatttaacaaatcaaaaactgaaaaattgggcgtgcaaaattattcagcccctttactttcagtgcagcaaactctctccagaagttcagtgaggatctctgaatgatccaatgttgacctaaatgactaattatgataaatacaatccacctgtgtgtaatcaagtctccgtataaatgcacctgcactgtgatagtctcagaggtccgtcaaaagcgcagagagcatcatgaagaacaaggaacacaccaggcaggtccgagatactgttgtgaagaagtttaaagccggatttggatacaaaaagatttcccaagctttaaacatcccaaggacgataatattgaaatggaaagagtatcagaccactgcaaatctaccaagacctggcc

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU891737 True 539 lncRNA 0.39 2 22823068 22848193

Neighbor

gene id symbol gene type direction distance location
sec24d LOC106577619 coding upstream 66070 22728099 ~ 22756998 (+)
LOC118966179 NA coding upstream 155172 22666376 ~ 22667896 (+)
LOC110531736 NA coding upstream 632765 21595032 ~ 22190303 (+)
LOC118966017 NA coding upstream 1391754 21430367 ~ 21431314 (+)
LOC110531733 LOC106577625 coding upstream 1467337 21292701 ~ 21355731 (+)
LOC110531753 LOC106577617 coding downstream 162492 23010685 ~ 23011526 (+)
gba3 LOC106577614 coding downstream 256980 23105173 ~ 23111380 (+)
LOC110531759 LOC106577602 coding downstream 888106 23736299 ~ 23749171 (+)
LOC110531760 LOC106577603 coding downstream 917082 23765275 ~ 23780276 (+)
LOC110531762 LOC106577606 coding downstream 943799 23791992 ~ 23795323 (+)
G782825 NA non-coding upstream 55664 22767205 ~ 22767404 (+)
G782824 NA non-coding upstream 56582 22766253 ~ 22766486 (+)
G782821 NA non-coding upstream 60158 22762556 ~ 22762910 (+)
G782820 NA non-coding upstream 60546 22761864 ~ 22762522 (+)
G782801 LOC106569888 non-coding upstream 109146 22713413 ~ 22713922 (+)
G782941 NA non-coding downstream 61022 22909215 ~ 22969770 (+)
G783396 NA non-coding downstream 191702 23039895 ~ 23040220 (+)
G783405 LOC106577615 non-coding downstream 195814 23044007 ~ 23067530 (+)
G783410 LOC106577615 non-coding downstream 205842 23054035 ~ 23057049 (+)
G783582 NA non-coding downstream 386591 23234784 ~ 23263612 (+)
G779964 NA other upstream 1720797 21101579 ~ 21102271 (+)
LOC110531706 naa38 other upstream 2741014 20079382 ~ 20082084 (+)
G779291 chd3 other upstream 2782785 20039611 ~ 20040283 (+)
LOC110531703 LOC106577651 other upstream 2799600 20009183 ~ 20090543 (+)
LOC110531697 NA other upstream 2930621 19876221 ~ 19914138 (+)
LOC110531761 LOC106577604 other downstream 954393 23802151 ~ 23804811 (+)
LOC110531763 LOC106577738 other downstream 985971 23834071 ~ 23839257 (+)

Expression


Co-expression Network