G783405 (LOC106577615)


Basic Information

Item Value
gene id G783405
gene name LOC106577615
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 23044007 ~ 23067530 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU892294
TCCTGGAAGCATTGGATATCCTTTGCCGAGTTCTAAACACACATTTGGGGAAGCAATTGACTATTAATATCGGATCTCTGCGTGATTTCAAAGCAGATTGTATCCGCCCGTTGGTCGACTTGATTAGCTCAAGAAAGAAAACAGAAAAGTGTCAACCTCAAGTTAACTTCCTAACAGATGGGATCGACTCCTTGAAACCTCTGTCATTATTTGAAGCTCACTCTCTTGACTGGAGGGAATCACTGAAGCCAACACTAATCAAGCCATAACTGCTCAATACATTATTCAAAGGCCGTATTACAGATTGTCACTTTCAAGATGGCCGGGTAATACATCTCTGCCTGCCTGAAATGTGCTTTGTATTGCATCATTAGCATAAACATTCAAGTGATGTCTTTACTTTCTTTGCTGTGTCCTTCGTGGCTTCGAAAGTTAGTCTTTTTTTAATGAATCCCATCTGGACATTCTTTTTACATGACCTTCACACAAAAGTTGAATAAAAGGACAGATTGATTCGGTATAGGTGCAGTATGTCAAACAAATGACTGTGAAAACGTATTGTGAACATTTAGGGCAGACCCTCCAGCATGGATTGCCCCTAGGCCCTATACGGGGATGACTAATAAACAGATTAAGACCAGTACATGATAACTGACAATTGGATGCATCTAGCAGACTAAATGATGGCAATCCATCCCTCTGCGACACATTGTGCGGTAAAGTACAGCTCAGTCGTcactcctccccactctctcctaaCAGATATATGCAGCAATATAAAACACTGATGGTCTgctacagagaggggagaggtataGAGGTGAAGATGCACTGCACTAATGATCCTCTCATTGCCGACAGTGACTCTCGCTGTCAAATCACTGCAGGCGGTGCAAGCCAGCGGACCCCTTGAGCAAGTCAGTGGTTCCTTGAGCTTGTAAAAATAGACCGTTTATAAAATGTCTCCTACAGAAACTGATGAGTGGCATCCAAAACACACACTTTCACAAACTCAAAACAGTGAGACTATTTATCCCGATACATTTttctttttaaattaaaaaaaaataattgtacaGAAATCTAAAAAGCAACAATAGTATAAAATAAAATTTCACAGTTGAAGGGTAGAGCATGTGATATGCAGTCTTTGGTGCAGAAAACATTCGCTACACGGTAGTTTCGTGTTTCCATAGGCCAGTCTTTATGTTGGCCGAGCTCAAGCTCTCTGTGTTGATTAAAGGCATGTTCTGCCCGTTGTCTTTGAGCGTGCCGTTTTGTATAGCCAAGTTGAGCCCGTACGATTTGGGCTGGCCCTCCACCAGTTCTGTGTTATTGGGCTGCTTTACGCTACTACTGCTTTTACTCGTAACCGAAGCAGCAGTCCCAACCCCCTCACTTTCTCCACCTGATCCTACTATTGTTCCTACACTACCACTTCCAACTCCTCTGACAGCCCCGTTGCCCAGGGTGCTAGTGCTGCCCCCTCCCTTGCCGGCATAGCGCGAGCGTCGGGGCAGGGATGTGCTGGCGTCGCTGCTGTCCTGTTGCATCTGGCTCTGGAGGCGCTCTCTGTATGCCATGTAGGCTGCCCGTCGGCTGCTCCGTGCCTGCTGACTGTCGTGGTGTTCGTGGCGATGCCGCCTGTGGGGGGTGCTCTGCACGCTGCTGTCCACGCTGGTGGGCACATCATAGGCGTACTCGCGCAGCACCGTGAGTCGGCTGGCCCGGTGGGCCCGCGCCCTGTTCTTGTGGTGCCGGCCCGCGTGTCCATTGGTGGCGGCGATgggattgttgttgttgttgacgggCCGGAACTGCACCTCCACAGGAGCCACGTGCATCTTGATCTCGTTGTCCACAGAGTGCTCAGTCAGGCTGTTGTCCTGCAAGGCTGCGCCATTAGCCAGCGCTGGAAGGGGTAGTAGGGGCAGGGACTTGTTCTGCGCCGCCTCTGCATGCAGATTGGTCAGTTTACTTCCCTGAGCGGAGTTTCGCATGCTGGGGACACTCTTATTGGTGCAGGATGACTCAGCGCTGCTGTGGGCACACTTGACTGCATCGCCATTGCCCCTACCAATCGACCCAGCCGCGGAGGCCGTGGATGTCCCCGGCAGCGGCAGCAGGGCGTCCTCTTGCGCAGAGTATGCCCGTCTCCCAGGGCAACAGGCCTGAGCCCAGTGGTGCCTCATGTCCTGGCGGTTGACGCAGTGGTGCGCCATTAGAAAGCCACCCAGGGCCAGCGCCACCACGCCAAACAGGCAGGAGAACACCAGGTCGGCCGGCCTCTCCTGGGACACGGCCATGGCACCAAACACCCACAGCGCAGCGTAGAGCCCAAGAGCTGCGGCTGCGCCCAGGAGCTGCACCGCGAATGTATGCTCGTTCTCCAAGGCCAACAGAGACACGGCGTGGGGAGCCAAAACTGTGGAGGACGAGGCGtcgtggaggtggaggagggtggCTGGGACATCTCCGGCCTCGCTGCCTGCTACCGCCAGTCGCCGCTGCTCCTCGGCGGGCTCTTTGAGTTCGTAGCGGCGCTCAGGGTGGCGTCGCAGCTGGAGGAGGATGCTAAGGAAATACATGCAGTCCACGAAGACGATGAAGCTGACAGGGCCGAAGAAGGCCCCCAGGCTGGGCTCCCACGCCATCCAGcaactgagacacacacagagggaaagGCATCAGTACAAACAgtaaatatttatgtaaatgtggtacACACGCACATTATCATTCACACAAATGTAGTA
>TU892296
TCCTGGAAGCATTGGATATCCTTTGCCGAGTTCTAAACACACATTTGGGGAAGCAATTGACTATTAATATCGGATCTCTGCGTGATTTCAAAGCAGATTGTATCCGCCCGTTGGTCGACTTGATTAGCTCAAGAAAGAAAACAGAAAAGTGTCAACCTCAAGTTAACTTCCTAACAGATGGGATCGACTCCTTGAAACCTCTGTCATTATTTGAAGCTCACTCTCTTGACTGGAGGGAATCACTGAAGCCAACACTAATCAAGCCATAACTGCTCAATACATTATTCAAAGGCCGTATTACAGATTGTCACTTTCAAGATGGCCGGGTAATACATCTCTGCCTGCCTGAAATGTGCTTTGTATTGCATCATTAGCATAAACATTCAAGTGATggtagcctagtggttagagcgttggactagtaaccggaaggttgcaagttcaaacccccgagctgacaaggtacaaatctgtcgttctgcccctgaacaggcagttaacccactgttcctaggctgtcattgaaaataggaatttgt

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU892294 False 2756 TUCP 0.52 2 23044007 23047045
TU892296 True 539 lncRNA 0.43 2 23044007 23067530

Neighbor

gene id symbol gene type direction distance location
LOC110531753 LOC106577617 coding upstream 32481 23010685 ~ 23011526 (+)
sec24d LOC106577619 coding upstream 287009 22728099 ~ 22756998 (+)
LOC118966179 NA coding upstream 376111 22666376 ~ 22667896 (+)
LOC110531736 NA coding upstream 853704 21595032 ~ 22190303 (+)
LOC118966017 NA coding upstream 1612693 21430367 ~ 21431314 (+)
gba3 LOC106577614 coding downstream 37643 23105173 ~ 23111380 (+)
LOC110531759 LOC106577602 coding downstream 668769 23736299 ~ 23749171 (+)
LOC110531760 LOC106577603 coding downstream 697745 23765275 ~ 23780276 (+)
LOC110531762 LOC106577606 coding downstream 724462 23791992 ~ 23795323 (+)
LOC110531761 LOC106577604 coding downstream 734621 23802151 ~ 23804811 (+)
G783396 NA non-coding upstream 3787 23039895 ~ 23040220 (+)
G782941 NA non-coding upstream 74237 22909215 ~ 22969770 (+)
G782868 NA non-coding upstream 195814 22823068 ~ 22848193 (+)
G782825 NA non-coding upstream 276603 22767205 ~ 22767404 (+)
G782824 NA non-coding upstream 277521 22766253 ~ 22766486 (+)
G783582 NA non-coding downstream 167254 23234784 ~ 23263612 (+)
G783847 NA non-coding downstream 374007 23441537 ~ 23441873 (+)
G783865 NA non-coding downstream 394380 23461910 ~ 23462140 (+)
G783866 NA non-coding downstream 395170 23462700 ~ 23462961 (+)
G783896 NA non-coding downstream 420159 23487689 ~ 23488013 (+)
G779964 NA other upstream 1941736 21101579 ~ 21102271 (+)
LOC110531706 naa38 other upstream 2961953 20079382 ~ 20082084 (+)
G779291 chd3 other upstream 3003724 20039611 ~ 20040283 (+)
LOC110531703 LOC106577651 other upstream 3020539 20009183 ~ 20090543 (+)
LOC110531697 NA other upstream 3151560 19876221 ~ 19914138 (+)
LOC110531763 LOC106577738 other downstream 766634 23834071 ~ 23839257 (+)
hacd4 hacd4 other downstream 1014726 24077880 ~ 24087340 (+)
G783410 LOC106577615 non-coding downstream 6990 23054035 ~ 23057049 (+)

Expression


Co-expression Network