XLOC_027011 (znf800b)


Basic Information

Item Value
gene id XLOC_027011
gene name znf800b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 3455146 ~ 3475397 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00053279
GTTCAATAAttgtcagaattttattttagagctagttgtaaacttttaaactgtttaaaactTGTTTGCATGATAGCCAAAGTGATTTACTGCATTATTATTAGCCGCATAGATCAACTTAAGCCTGAATGTCATGTTTGGCGATCATTTATCCATCGACTCTTCTGGAAACTCGAACACTGGATCTTTTAGATAAGACTTCTTGTGAGTGAgTGCACGTGTGCTGGAGAGAGTCACATTCATGCGCGTGGACGCGTCACGCAACATCCAGGAGCACCTCAAGAGAGCCAAAGTCGAAGATCTTCCGGGAATTTATCGAGACTCGTTTAATGTGCTTTTAGGATGGAGGAAGCTCCGTCCAATGAAAAATCTTGCCAGACGGATGTCTCTCCTGGATCTGATCATCCCATCAAGACACCAGTTTACTCAACAGAACCAGGAGATCCTCCCTTACTCCAAACCCCAATGCTCACCTCTAAATCTGGCATCCAGCAGATCATTGAGTGTTTCCGCACAGGTACTGCACAGCTGAAGCACATTCTCCTGAAAGAGGTGGACACCATCTTTGAATGTAAACTCTGCCGCAGTCTCTTCCGTGGCCTTCCTAATCTGATCAAACACAGAGAAATGTACTGTTTCACTCGAATGCCTGAACATGATGTTCTTTCTGTTGATGGCAAGAAGAGCGTGAAAGAACTTCTTGAAGCCATCTACCCTTACTCCAATAAAGAGGAATGTGTATTAACACTGGAGCCCATTGCCGGCAACCAGAATGCTGTGTATCAATACCTGTCCAAAGACCACAGCCTGGCATCTTCAAGCCCTAATCATAGCACAAACAGCTGGGGACACAACATCTCAGACAACCAAGAGCTGTATACAATGGAGATCCCCTTGGGAGAGGAAGAAAACGGTTATATACACGATGAAAGAGAGAACGTTGACATAATAGAGAGAGTAGATGCAGACGAAAGCAAGGTGCATCAGGATAGTGAAGAACCCGAGGAGACAACAGAAGAAGCAGGTGATCTGGCTTACAAATGCATCCTCTGCAACAGGACTTACAGAGTTCGAGGCCACCTTAAAAGACACATGCAGACTGTTCATAAGGTTGTGTCCTCTAGTTTGACAAGCAAATCTAAGAAGATGACCAATGGCAAACTTGCAGACAATCCCAATGCAAGCCCAAGCTCTTCATCTGACTCCCAGAGCTCGAAGAATCCCAAGGAGAACAAGGATCCAAAATTCACTATAGGTTTTGACTTCAAGACGTGCTTCTGCAAGCTCTGCAGACGGACATTCAGCTCCGAGCAGAACCTGGAGAAGCACATTGAGCTGCACACAGATAACGGTACTGACTTCTTCGTCAAGTTTTACTGCTGTCCGCTCTGCCACTATAAAACACGCCGCAAGAGAGATGTGCTGCGCCATCTCTCAGACTTCCACAAGAAGAAATCCTTGTACTTGAGCAAGATCTCCCAGTCGCTGGAGGACTATTCAATCAAGAAGCCAGCGGATGTTGTGTTGAGCAAGGATCTGTCCAAAGATCGAGATCAACAGGAGTTAAAAGCTAACTCCAAGCATGCTTCGCCATACGTGACACGAAAGAACCTGACGAAAACAGCACTGCGCAACAAGACCTTAAAGACTGGTAATAAGGTGCACCACAAAAAGGAAGTGAAAAAAGCGAAGCCTGATAGCCCCAAAGGCAGTGTCACCAAGAAatcagtgcatgtgtgtgacGTCTGTGGGGAGAGCTTCATGAAGACAAGGTATCTGGGGTTGCACAAGAGAATGCATCTGAAAACCGCATCCAGGAGCGCAGGAGTCAGAACTAGGTCAAAGGCCATGCTTTGATATCGTCTGACCACAAACTGGACTCGCGGAAACATCGGAAAAAAGAATGACAAGACCTATTAATTAACTCAAAATCTATCCACAAAAGACTCTCGGTCACAAATAGAGTGTAAAATACCTTGGGAATGTATTCGAGAGCTTTCCCTTGGTCCTAAACACTCATATCAGAGAATGTATCATGAATATTCTGTCTATTATCCTATGATTAAGGGACACTCTGATGAACTAAgacagtggtgctcaaccctgttcctggagatctaccttcctgcaaagttcaggtCCAACCCGGATCAAACACACATGAGCCAATTAATTAatacctgaacagcacttgataattacaggcatgtgcgtttgatatgggttgcaactagaatctataggaaggtagatctccaggaacagggttggtcacccctgcagTGAGAGAAAAAGctattatttgctttattttttcctccaCCGCCATCAATAAGACTTGACGTTTCTGTCCAAAAATGGCCAGACGATTGTTCCAGGACTTCATCGCAGTGAGTTTGGCCTCAGGCGAAGCTTCAAGACACAAATGATCCACAAACTCCTGCGAACCGCTGCTGAAGACTGGCTATTGACATCTATTGCACACATTGGCATTCAGTGCAGTTGCATAGGCTAGTCTTTTTTCTTGTCCATTTCTGTGAAAGTGCTGGACGCTGAAGACCACTGGAACAGTCTACTTCAGTTATATtagaaaaaaggatttttttatgtttggaaATAACGTGATCTGGGCAAGAAGATAGACTGTCCATGTTTGAACTGGAGGTGAAACACTTTTTCTGtccaatgttttattattgttccTCTTTAGTTGCATCAACTGCAGTGCTTGAAATGCTCTGTTATCAGTTTTAGACTCAGttgtttaattatttcttcatCTCAAAATCCAGGTCTTTACAGGCATTTACTTGGAGGATTTAGTAAATGATTTCTCATTGTAATCTGATTGTATTCACTAACAATAAACAGAGGAAAAAAATGGACTGTGTGAGTGTTT
>TCONS_00053280
GATGGATTTCAAGTGTTTGCTCAATAGTGCACGTGTGCTGGAGAGAGTCACATTCATGCGCGTGGACGCGTCACGCAACATCCAGGAGCACCTCAAGAGAGCCAAAGTCGAAGATCTTCCGGGAATTTATCGAGACTCGTTTAATGTGCTTTTAGGATGGAGGAAGCTCCGTCCAATGAAAAATCTTGCCAGACGGATGTCTCTCCTGGATCTGATCATCCCATCAAGACACCAGTTTACTCAACAGAACCAGGAGATCCTCCCTTACTCCAAACCCCAATGCTCACCTCTAAATCTGGCATCCAGCAGATCATTGAGTGTTTCCGCACAGGTACTGCACAGCTGAAGCACATTCTCCTGAAAGAGGTGGACACCATCTTTGAATGTAAACTCTGCCGCAGTCTCTTCCGTGGCCTTCCTAATCTGATCAAACACAGAGAAATGTACTGTTTCACTCGAATGCCTGAACATGATGTTCTTTCTGTTGATGGCAAGAAGAGCGTGAAAGAACTTCTTGAAGCCATCTACCCTTACTCCAATAAAGAGGAATGTGTATTAACACTGGAGCCCATTGCCGGCAACCAGAATGCTGTGTATCAATACCTGTCCAAAGACCACAGCCTGGCATCTTCAAGCCCTAATCATAGCACAAACAGCTGGGGACACAACATCTCAGACAACCAAGAGCTGTATACAATGGAGATCCCCTTGGGAGAGGAAGAAAACGGTTATATACACGATGAAAGAGAGAACGTTGACATAATAGAGAGAGTAGATGCAGACGAAAGCAAGGTGCATCAGGATAGTGAAGAACCCGAGGAGACAACAGAAGAAGCAGGTGATCTGGCTTACAAATGCATCCTCTGCAACAGGACTTACAGAGTTCGAGGCCACCTTAAAAGACACATGCAGACTGTTCATAAGGTTGTGTCCTCTAGTTTGACAAGCAAATCTAAGAAGATGACCAATGGCAAACTTGCAGACAATCCCAATGCAAGCCCAAGCTCTTCATCTGACTCCCAGAGCTCGAAGAATCCCAAGGAGAACAAGGATCCAAAATTCACTATAGGTTTTGACTTCAAGACGTGCTTCTGCAAGCTCTGCAGACGGACATTCAGCTCCGAGCAGAACCTGGAGAAGCACATTGAGCTGCACACAGATAACGGTACTGACTTCTTCGTCAAGTTTTACTGCTGTCCGCTCTGCCACTATAAAACACGCCGCAAGAGAGATGTGCTGCGCCATCTCTCAGACTTCCACAAGAAGAAATCCTTGTACTTGAGCAAGATCTCCCAGTCGCTGGAGGACTATTCAATCAAGAAGCCAGCGGATGTTGTGTTGAGCAAGGATCTGTCCAAAGATCGAGATCAACAGGAGTTAAAAGCTAACTCCAAGCATGCTTCGCCATACGTGACACGAAAGAACCTGACGAAAACAGCACTGCGCAACAAGACCTTAAAGACTGGTAATAAGGTGCACCACAAAAAGGAAGTGAAAAAAGCGAAGCCTGATAGCCCCAAAGGCAGTGTCACCAAGAAatcagtgcatgtgtgtgacGTCTGTGGGGAGAGCTTCATGAAGACAAGGTATCTGGGGTTGCACAAGAGAATGCATCTGAAAACCGCATCCAGGAGCGCAGGAGTCAGAACTAGGTCAAAGGCCATGCTTTGATATCGTCTGACCACAAACTGGACTCGCGGAAACATCGGAAAAAAGAATGACAAGACCTATTAATTAACTCAAAATCTATCCACAAAAGACTCTCGGTCACAAATAGAGTGTAAAATACCTTGGGAATGTATTCGAGAGCTTTCCCTTGGTCCTAAACACTCATATCAGAGAATGTATCATGAATATTCTGTCTATTATCCTATGATTAAGGGACACTCTGATGAACTAAgacagtggtgctcaaccctgttcctggagatctaccttcctgcaaagttcaggtCCAACCCGGATCAAACACACATGAGCCAATTAATTAatacctgaacagcacttgataattacaggcatgtgcgtttgatatgggttgcaactagaatctataggaaggtagatctccaggaacagggttggtcacccctgcagTGAGAGAAAAAGctattatttgctttattttttcctccaCCGCCATCAATAAGACTTGACGTTTCTGTCCAAAAATGGCCAGACGATTGTTCCAGGACTTCATCGCAGTGAGTTTGGCCTCAGGCGAAGCTTCAAGACACAAATGATCCACAAACTCCTGCGAACCGCTGCTGAAGACTGGCTATTGACATCTATTGCACACATTGGCATTCAGTGCAGTTGCATAGGCTAGTCTTTTTTCTTGTCCATTTCTGTGAAAGTGCTGGACGCTGAAGACCACTGGAACAGTCTACTTCAGTTATATtagaaaaaaggatttttttatgtttggaaATAACGTGATCTGGGCAAGAAGATAGACTGTCCATGTTTGAACTGGAGGTGAAACACTTTTTCTGtccaatgttttattattgttccTCTTTAGTTGCATCAACTGCAGTGCTTGAAATGCTCTGTTATCAGTTTTAGACTCAGttgtttaattatttcttcatCTCAAAATCCAGGTCTTTACAGGCATTTACTTGGAGGATTTAGTAAATGATTTCTCATTGTAATCTGATTGTATTCACTAACAATAAACAGAGGAAAAAAA

Function

symbol description
znf800b Predicted to enable metal ion binding activity. Orthologous to human ZNF800 (zinc finger protein 800).

GO:

id name namespace
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-1166 Predicted to enable metal ion binding activity. Orthologous to human ZNF800 (zinc finger protein 800).

Ensembl:

ensembl_id ENSDARG00000039843

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00053279 False 2899 mRNA 0.43 7 3455146 3475397
TCONS_00053280 True 2695 mRNA 0.44 6 3455665 3475379

Neighbor

gene id symbol gene type direction distance location
XLOC_027010 atxn7l1 coding upstream 8388 3438510 ~ 3446758 (+)
XLOC_027009 NA coding upstream 32683 3421471 ~ 3422463 (+)
XLOC_027008 NA coding upstream 41991 3404869 ~ 3413155 (+)
XLOC_027007 sypl1 coding upstream 56761 3389866 ~ 3398385 (+)
XLOC_027006 nampta coding upstream 69694 3358383 ~ 3385452 (+)
XLOC_027012 grm8a coding downstream 2652 3478049 ~ 3745093 (+)
XLOC_027013 NA coding downstream 41306 3516703 ~ 3516910 (+)
XLOC_027014 NA coding downstream 338384 3813781 ~ 3815416 (+)
XLOC_027015 NA coding downstream 469319 3944716 ~ 3952419 (+)
XLOC_027016 gpr37b coding downstream 504850 3980247 ~ 3998490 (+)
XLOC_027005 NA non-coding upstream 116206 3309485 ~ 3338940 (+)
XLOC_027004 NA non-coding upstream 147292 3305178 ~ 3307854 (+)
XLOC_027002 NA non-coding upstream 551105 2902347 ~ 2904041 (+)
XLOC_027017 NA non-coding downstream 584470 4059867 ~ 4063556 (+)
XLOC_027018 NA non-coding downstream 589921 4065318 ~ 4071401 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000066_03231699_03235207 NA coding CI01000066 null 3231699 ~ 3237053 (+)