G784096


Basic Information

Item Value
gene id G784096
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 23796210 ~ 23797923 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU893028
aataggagaaaactgaggatggatcaacaatgttgtagttagtccacaatactaatctaaatgaaagagtgaaaaggaagaagacaaatattccaaaacatgcatcctgtttgtatcAAGGCACTAAAATAACACTGCAAAAAATTGTGCAAATcaatttactttttgtcctgaatacaaagtgttatctTTGGGGCAAgtccaataaaacacattagtgagtaccactctccatattttcaagcatggtagtggctgcatcatgttatgggaatgATTGTAACTgttaaagactggggagttttgtggataaaaaagaaatggaatggagctaagcacagaaaAAATCCTATAGAAAAATCTGGTTCAATCTGCTTTTCACCCGACACTGAGAGATGAATTcgcctttcagcaagacaataacctaaaacacagggCCAAatctggagttgcttaccaagaatgcAGTGAATGTTTCTGAATGGCTGAGTAACAGTGTTGAATCTgcttgaacatctatggcaagacctgaaaatggttgtctagcaatgatcaactaccaatttgacagagcttgaagaattgtgaaaagaataatgggcaaatgttgcacaattcaaggtgtggaaagctcttaaaaacgtacccagaaagacacagctgtaatcactgccaaaggttcttctacGCAGTATTGGctcaggtgtgaatacttatgtaaaggagatattctgtatttcatttttaatacactttattattatggggtattgtgtgtagatgggtgagattttcTTTTATTTcaaccattttgaattcaggctgtaacacaaccaaatgtgaaataaatcaagggctatgaatactttctgagggcaCTGTAGAGGAATATAATTGAGCATTTCTTGATTCCAACCATGAAATGTCTTGaaatagagctatcttctgcataccactcctaccatgtcacaacacaactgattggctcaaacacattaagaagggaaaaaaaaatccacaaattaacttttaacaaggtacacctgttcattgaaattcattccaggtgactacctcatgaagctggttgagagaatgccaagagtgtgcaaagctgtcaaggtggctacttt

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU893028 True 1133 lncRNA 0.37 2 23796210 23797923

Neighbor

gene id symbol gene type direction distance location
LOC110531762 LOC106577606 coding upstream 887 23791992 ~ 23795323 (+)
LOC110531760 LOC106577603 coding upstream 15934 23765275 ~ 23780276 (+)
LOC110531759 LOC106577602 coding upstream 47039 23736299 ~ 23749171 (+)
gba3 LOC106577614 coding upstream 684830 23105173 ~ 23111380 (+)
LOC110531753 LOC106577617 coding upstream 784684 23010685 ~ 23011526 (+)
LOC110531761 LOC106577604 coding downstream 4228 23802151 ~ 23804811 (+)
LOC110531763 LOC106577738 coding downstream 36148 23834071 ~ 23839257 (+)
LOC110532973 aco1 coding downstream 44555 23842478 ~ 23845111 (+)
LOC110531766 LOC106577601 coding downstream 79118 23877041 ~ 23886260 (+)
tspan5a LOC106577600 coding downstream 88854 23886777 ~ 23914624 (+)
G784063 NA non-coding upstream 158324 23637683 ~ 23637886 (+)
G784056 NA non-coding upstream 173529 23622448 ~ 23622681 (+)
G783896 NA non-coding upstream 308197 23487689 ~ 23488013 (+)
G783866 NA non-coding upstream 333249 23462700 ~ 23462961 (+)
G783865 NA non-coding upstream 334070 23461910 ~ 23462140 (+)
G784097 NA non-coding downstream 9970 23807893 ~ 23808082 (+)
G784165 NA non-coding downstream 17926 23815849 ~ 23816178 (+)
G784176 NA non-coding downstream 34890 23832813 ~ 23833043 (+)
G784179 NA non-coding downstream 43332 23841255 ~ 23841479 (+)
G784200 NA non-coding downstream 78408 23876331 ~ 23918330 (+)
G783405 LOC106577615 other upstream 749165 23044007 ~ 23067530 (+)
G779964 NA other upstream 2693939 21101579 ~ 21102271 (+)
LOC110531706 naa38 other upstream 3714156 20079382 ~ 20082084 (+)
hacd4 hacd4 other downstream 284333 24077880 ~ 24087340 (+)
G785138 NA other downstream 784464 24582387 ~ 24582877 (+)
LOC110531788 LOC106577570 other downstream 1132428 24872772 ~ 24952098 (+)

Expression


Co-expression Network