G784271


Basic Information

Item Value
gene id G784271
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 24038627 ~ 24041484 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU893220
TCTGGAAAAGTATTTCAAATTTATTAAACAAGTCTCAATGTACATTTGTTTGCAAAAACACATTCATTCGCAGTAGCAATATTTTTTACACCATAAAGAAGTCTGTTTCCTTCAACTGCTAGTTTTCTACACTTCCTGTGGCCAGTAGAGGCATATTCAATTTCTTTTCTGTTTCACAAAAAATCTAGATTTTCTTTTCCGTTAGGTTCATCCATATTGTCAGAGGTAAGGAGAGACCTCAATATCTAAAAGACacgtgatttttttttttcactcgctttctcttcctcccttcaaCCATTATTTTTAGACTTGCTCATACCCTCACAACATTCTTTAGTCCTTCTGTCCAATATTTAGTATACACCTTTCACAATGACGCCTCAAAGATTAAACCTTTTTTTCTGCAGCAATACTCATCAAATGTAGTGGATTACAAAAATTCCATCCCTAGCCAACCCTGAAACAATCCACTGctgcaaatatattttttttcatgaaGATCTGTATGATTGATGAAAACAGGTGAAATTATGGAAGTAAATAGTGTAAGTGTATTATCCTgcattaaagtaactgtccagtgtttccagattttgATGAAATATGACCAATAATTAATTACAATACGAGTTAAATAGTTTTCCATAAAATAAATGGTAATTAAGTATGTTTTCTGTgttggtgtgggcgtaccccaacaacagaatggtgtggtcataTACCGCTCATTAAAAATATTAATGCGAGTAGACGGcagattggccagctcatcctccccAGGAAGGTGACATCATCCTCCTCTTTAAAaggtctgtttgagatacaagtttatagtgtttttttctccaattgcagctttggccacaaatacgagtatTGGATAAGTCAACAACAAAACATAGTCATTCAATTTGATTTTCACTAGACAGTTCCTTTAAAGGCCTGTGATTTTCTATATTTCCACACTAGGTtttgaataatactgtgaaattgtgaaaatgatgatcgtgctcttttagtgtaagagatgtttgaaaagaccggctgaaatgtcagcctgttttggtgggatggagttttggcctgcctggtgatgtcaccaggctgTAAATCTGTTAATAATAGACAAATaaaaaagagagttccaaacctctctgccaataacagctcgttttcaattttcccctccccactcagaccactcccagacagtcctagcaaaattatttattaagaaattgctctttgctaagcagctatttttgtttatttttggacCTTTAAAAATATCAAACAGCAATCCCAAAACATACTTATGAAGGGAGATGGATGGACTGGCCAGCAGTTCCGAAAGCATGTGGTTTGCTGTACACATCAATATAAAACAAATATGTTTGCACATATTGTATAGGGGGTCTGGaaagaaaacatattttttaaatacagcgAAAGCCCCATCAACTTGTCCAAAACAGACTTCAACTCATAAATGTGAGATTACTGTATCCATGTTACTATAAAAACATCAAGAATACTTTCCACACCGCAAATCTTCAGTTGTGTTTTTATGAAACCTTATGAAATGTCTAAACATCCACCTCTTACTCACAGTGCTTGCTACCTGCATTAAGAGCACCTAAATGTGACAGGGCAAAATTGTCAACACTTAATGACATTGCAGTAATAACAATACCCAAGATAAACAGGCAACAACATACCAATTTCAGCAGAAGTATATCAAACCAAACCACATATTGCATAATGTGTATTCAAGACAAGCGCTCATTCATTTTCAATAGTAAAATAATAACAAGGTTCAGAAAGGAAATAGAATGTCCACCATAATTGTTTTTAGTGCTAATATTGTTGGCAACATATCGTTTTTTTTAACCAATTAAAACAATTCAAgattatactgtactgaactgaactCACCAACAGGGAGAAAGCAAACAGCAGGTGGCACCGtaacagagagaagggaggaagccAAGTACAGGTTCAGATCAAGGTCAATAAAGATACAAAGAGAGATATAAGCCCTCTTCCATTCTCCTGAGGACTTAGTTCAAGTGTGCTGTCAAGCCTCATGTACTTGCTAAAGAAATAAATGGGACAACCTGCACCCTTCCGGAAGTTGTGCATTTTAGAACATAGACCTCTAGCGTGGAGAATGTGACAAAGAAAATGTGTACAACATGCTTCCCAATCCATTCCTAGGAACCTCTCAGTGAGCACTTATTTTTAGCCCAGCACTTGCACACCTAATTTAACTCCTCAACCCTTGATTTGTTGGCACAGGTGTGTTAATGCTGGGCTAGAACAAAGGGGCAGTGCTGGGGGTCCCACATGAATGGATTTGGAGCCTAATCTTATTAATAACCAATGGAGGGTGGGTTTGACAATCATGATTACTATTATTAATTCAATGTACAGATTAAAATGATTATCATGACAATGCCTGTGAGAACGATTGCATGAGGTTATATTGCATTGCATGAGTATTGCAATACCAAATCAAAATGACCCAAAATCAAACATGTAAATAAAATATACAGCACATGGTAAAAAACTACATTAACTAGTAAACATTTCTGCCAAACTCCCAAATGTAACACAGAGTTAAGAAAAGAAAGGGGGATAGAGTGGTAGCCTACTTCAGAAAGGTGAGGCAATAACAATCCTGTCGgttgagatgaccaagaaccgTGATGACCATGACGACCGGCATTGATGACCATGAACCAAATAGTCCAGACAGTAGGGTTAGGGGCACTGGGGGCCCAGAACACATCAGGACACGTCAAAAGTCACTCCTATGTGGGAAACAGAACACGTCAGGGCATGTCAAAATG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU893220 True 2858 lncRNA 0.37 1 24038627 24041484

Neighbor

gene id symbol gene type direction distance location
LOC110531767 LOC106577598 coding upstream 24790 23995226 ~ 24013837 (+)
LOC110531768 NA coding upstream 51286 23976530 ~ 23987341 (+)
tspan5a LOC106577600 coding upstream 124003 23886777 ~ 23914624 (+)
LOC110531766 LOC106577601 coding upstream 152367 23877041 ~ 23886260 (+)
LOC110532973 aco1 coding upstream 193516 23842478 ~ 23845111 (+)
hacd4 hacd4 coding downstream 36396 24077880 ~ 24087340 (+)
mllt3 LOC106577592 coding downstream 107562 24149046 ~ 24197744 (+)
LOC110531780 bank1 coding downstream 328345 24369829 ~ 24403607 (+)
LOC110531781 LOC106577736 coding downstream 415174 24456658 ~ 24484458 (+)
LOC110531785 plap coding downstream 559850 24601334 ~ 24624296 (+)
G784277 NA non-coding upstream 12615 24025802 ~ 24026012 (+)
G784269 NA non-coding upstream 20486 24017904 ~ 24018141 (+)
G784262 NA non-coding upstream 44238 23994189 ~ 23994389 (+)
G784200 NA non-coding upstream 120297 23876331 ~ 23918330 (+)
G784382 NA non-coding downstream 131658 24173142 ~ 24173363 (+)
G784366 NA non-coding downstream 150133 24191617 ~ 24272071 (+)
G784365 LOC103399096 non-coding downstream 165692 24207176 ~ 24208822 (+)
G784387 NA non-coding downstream 205164 24246648 ~ 24248520 (+)
G784437 NA non-coding downstream 234560 24276044 ~ 24278695 (+)
LOC110531763 LOC106577738 other upstream 199513 23834071 ~ 23839257 (+)
LOC110531761 LOC106577604 other upstream 234490 23802151 ~ 23804811 (+)
LOC110531760 LOC106577603 other upstream 259126 23765275 ~ 23780276 (+)
gba3 LOC106577614 other upstream 930588 23105173 ~ 23111380 (+)
G783405 LOC106577615 other upstream 991582 23044007 ~ 23067530 (+)
G785138 NA other downstream 540903 24582387 ~ 24582877 (+)
LOC110531788 LOC106577570 other downstream 888867 24872772 ~ 24952098 (+)
LOC110531825 LOC106577732 other downstream 1486189 25525371 ~ 25532692 (+)
G786091 NA other downstream 1503747 25545231 ~ 25546967 (+)

Expression


Co-expression Network