G784366


Basic Information

Item Value
gene id G784366
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 24191617 ~ 24272071 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU893322
gtgtgtggttcgATTGGATGGaaaaaccacaaaaaaaaaatttttttttgttttatctTAAAGTATTAAGCAGTAACAAACCTGTAACTGATATACAAAGCAGAGTtccaaataataacaataacattaTTAATAATAGTAATTAAATTACACTTTCTGTGGCACGTTTACAAAACAGAACAAACATTTCTAACCCGTTATATGGCACTAACAGTTATCATGCATTTTGAGTTCCACATGTAACCACAAACCTCACAAGAATGGTCAAACATGCTAAATCTGACTGTGTGCACTTACAAGTGCATGTTAAAAATATGATTCCTTTTCCATCTCAGATAGTTAAATGTTTCAATTATAAAATAAGTTGAAGGCATATAAAGCATTATCATGGTGTTAATTTAATGAATGCCGATATACGTTTCCAGTATATATTCACTAAGCGCACTACATTTAAAAACAGGTCTCCGTAGCCAAGGCATTCAATTCATTTATTCATTCCTTTGTTTCATTTTATAAAACATGCATAGGCAGACACTTTCagttgattgtttttttttttacacaatatAGGTTCTTTATGTTTACTTTGTTCGCAATACTTTAAAAAGAGAAAAATGAACACTCACAGAATCCCAGCAAGCCACAATAAAATCTATATtcccaaaaaacaacaaaaacatatttgCAAATAATATATAAATGTAAATTCCAGTTATGAAACTCCCCAAAAAATAGGTATTCATCACCAAGGTAATAATTTGCCATTTTCCAGAAATCTGGGTCAAAAGCACACACCAAATGAACCTGAGGTAAGCATAATCTGTACAAAACCATAAAACTTTAAATTTTTGGGGCATTTAAACAATGTTGCAACATTCTTTTTAAGACTGCCTAATTTATTTCAGAGCTATTTTATAAGAGTAGCaaaaaaagttattaataaatagTCCTTACTTAATTTGTACACCCTtatatgttaaaaacatgttttttttaatgttttgccCTTTTTAGTGCTGTATTTTGTAAACGTACAATAGTTAGTAAGAAGTTACACAAAATTTCCATATCCAGTAAAAccgggctctccaaccctgttcctggagagcaaccgtcctgtaggttttcactgcAACCCTAATCAAGCgtacctgattctaataattagctggttgataagctgaatcaggttagagTAGTTACAATtggggttggagcgaaaatctacaggagggtagcttttcaggaacagggttggagggcccTGCAGTAAAATGAGCTAGGGGCTTTcataaattctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctcgtctcagaATCAAGCACGTCATCACCAGCTTCGAGGAGGCCAAGGGCCTGAAAAAGTGAACGAGCAATAACTTTCCGTAGTTCGACCCACCCTGGTCGCCACAGACTGCCACCACCAGCCGTGGTGGAGCGTGCCCCTTCACTGGATGTTGCTGCTGTCCTTGGCGTCTGTGCCATTGGTCTCCGAGGACAGAGCCTTGTTGAGGGAGTTGAGGCTGGCGTCTGAGGGGAGGCCGTCCCGCCTCGGGGGCATCCGCTCGTTGATGCGGTCCAGGCCCTTGGCCTCCGCAAAGCTGGTGATTTTGTGCTGGGGCGAGAAGCCCTTGATgg

Function

NR:

description
serine/threonine-protein phosphatase 2B catalytic subunit alpha isoform-like isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU893322 True 1690 lncRNA 0.39 3 24191617 24272071

Neighbor

gene id symbol gene type direction distance location
hacd4 hacd4 coding upstream 104277 24077880 ~ 24087340 (+)
LOC110531767 LOC106577598 coding upstream 177780 23995226 ~ 24013837 (+)
LOC110531768 NA coding upstream 204276 23976530 ~ 23987341 (+)
tspan5a LOC106577600 coding upstream 276993 23886777 ~ 23914624 (+)
LOC110531766 LOC106577601 coding upstream 305357 23877041 ~ 23886260 (+)
LOC110531780 bank1 coding downstream 97758 24369829 ~ 24403607 (+)
LOC110531781 LOC106577736 coding downstream 184587 24456658 ~ 24484458 (+)
LOC110531785 plap coding downstream 329263 24601334 ~ 24624296 (+)
LOC110531793 LOC106577583 coding downstream 447954 24720025 ~ 24726878 (+)
LOC110531798 LOC106577580 coding downstream 463594 24735665 ~ 24770025 (+)
G784382 NA non-coding upstream 18254 24173142 ~ 24173363 (+)
G784271 NA non-coding upstream 150133 24038627 ~ 24041484 (+)
G784277 NA non-coding upstream 165605 24025802 ~ 24026012 (+)
G784269 NA non-coding upstream 173476 24017904 ~ 24018141 (+)
G784262 NA non-coding upstream 197228 23994189 ~ 23994389 (+)
G784437 NA non-coding downstream 3973 24276044 ~ 24278695 (+)
G784980 NA non-coding downstream 150932 24423003 ~ 24423272 (+)
G784995 NA non-coding downstream 159884 24431955 ~ 24432190 (+)
G785021 NA non-coding downstream 174794 24446865 ~ 24447152 (+)
G785026 NA non-coding downstream 179729 24451800 ~ 24452072 (+)
LOC110531763 LOC106577738 other upstream 352503 23834071 ~ 23839257 (+)
LOC110531761 LOC106577604 other upstream 387480 23802151 ~ 23804811 (+)
LOC110531760 LOC106577603 other upstream 412116 23765275 ~ 23780276 (+)
gba3 LOC106577614 other upstream 1083578 23105173 ~ 23111380 (+)
G785138 NA other downstream 310316 24582387 ~ 24582877 (+)
LOC110531788 LOC106577570 other downstream 658280 24872772 ~ 24952098 (+)
LOC110531825 LOC106577732 other downstream 1255602 25525371 ~ 25532692 (+)
G786091 NA other downstream 1273160 25545231 ~ 25546967 (+)
G785962 LOC105020693 other downstream 1440926 25712997 ~ 25742909 (+)

Expression


Co-expression Network