G784365 (LOC103399096)


Basic Information

Item Value
gene id G784365
gene name LOC103399096
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 24207176 ~ 24208822 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU893317
AAATACAACTTCAAACATGGAAATGCCACTGGTATGCCAAAATGTACACAATAAAAACAGCACACATCAACAAAGCCAAAAATCAAAACCAGCTTCTCTGAAGCCACTTTTCCTCAGATGAGTAGATGCAagttaatacatttaaaaagtcCTAAAGTTCTACCAAGCAAAACATTGAAGCAGAATGTCCTGAGATGACCCCATGCCACTGTTTGCAGGGTTATACAGTCTTCTGCTGTCCCTTCTTTCCAATCAGTGACTTGTGGATATGAGGGATGACACCACCACCAGCAATGGTTGCTTTGATGAGAGAATCCAACTCCTCATCGCCTCTAATGGCCAGTTGCAAGTGACGTGGAGTGATACGCTTGACCTTCAGATCCTTTGATGCATTTCCTGCCAGCTCCAGAACCTCAGCAGTTAGGTATTCAAGAATAGCCGCGCTGTAGACAGCTGCAGTCGCGCCAACTCGACCATGGCTCGTTGTTCTGGATTTCAGATGTCTGTGAATACGACCCACGGGGAACTGCAAACCCGCCCTCTGTGAGCGCGAAATGGCCTTTGTCTTCGTCTTCCCGGAGTCTTTTCCTGCCTTCCCACCAGCcaTTTTATATGATGTCCTGGCTTTTTGCAGCTGCACAGATCCTCGGCGAGCACTTGTCTAGTTTAAACAACTAGTTCCGCATCAGATTGCCATGCATTTATGAAGGGGAGCTTGATCCGGGACTTTGCATGGAGGAAGTCAGCCAATCAACTCTCGAATTCATTTTTTGGCATAGCGCTTAACCAATCACAATGCAAAAGTGCTCAATGTGCGGGAAAATGTGACACGTCATTCCTCACTGGACGTTGGATAATGTCG
>TU893318
AAATACAACTTCAAACATGGAAATGCCACTGGTATGCCAAAATGTACACAATAAAAACAGCACACATCAACAAAGCCAAAAATCAAAACCAGCTTCTCTGAAGCCACTTTTCCTCAGATGAGTAGATGCAagttaatacatttaaaaagtcCTAAAGTTCTACCAAGCAAAACATTGAAGCAGAATGTCCTGAGATGACCCCATGCCACTGTTTGCAGGGTTATACAGTCTTCTGCTGTCCCTTCTTTCCAATCAGTGACTTGTGGATATGAGGGATGACACCTGAAAGAGGGAAACAATCAGTGGATTCAAACATGAAATATAAAACAGGGAAATGGTACAATAGCAATACCAGTGGGAAACAATAACTGCTGCACTTACCACCACCAGCAATGGTTGCTTTGATGAGAGAATCCAACTCCTCATCGCCTCTAATGGCCAGTTGCAAGTGACGTGGAGTGATACGCTTGACCTTCAGATCCTTTGATGCATTTCCTGCCAGCTCCAGAACCTCAGCAGTTAGGTATTCAAGAATAGCCGCGCTGTAGACAGCTGCAGTCGCGCCAACTCGACCATGGCTCGTTGTTCTGGATTTCAGATGTCTGTGAATACGACCCACGGGGAACTGCAAACCCGCCCTCTGTGAGCGCGAAATGGCCTTTGTCTTCGTCTTCCCGGAGTCTTTTCCTGCCTTCCCACCAGCcaTTTTATATGATGTCCTGGCTTTTTGCAGCTGCACAGATCCTCGGCGAGCACTTGTCTAGTTTAAACAACTAGTTCCGCATCAGATTGCCATGCATTTATGAAGGGGAGCTTGATCCGGGACTTTGCATGGAGGAAGTCAGCCAATCAACTCTCGAATTCATTTTTTGGCATAGCGCTTAACCAATCACAATGCAAAAGTGCTCAATGTGCGGGAAAATGTGACACGTCATTCCTCACTGGACGTTGGATAATGTCG

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU893317 False 862 lncRNA 0.46 5 24207176 24208822
TU893318 True 961 lncRNA 0.45 4 24207176 24208822

Neighbor

gene id symbol gene type direction distance location
mllt3 LOC106577592 coding upstream 9432 24149046 ~ 24197744 (+)
hacd4 hacd4 coding upstream 119836 24077880 ~ 24087340 (+)
LOC110531767 LOC106577598 coding upstream 193339 23995226 ~ 24013837 (+)
LOC110531768 NA coding upstream 219835 23976530 ~ 23987341 (+)
tspan5a LOC106577600 coding upstream 292552 23886777 ~ 23914624 (+)
LOC110531780 bank1 coding downstream 161007 24369829 ~ 24403607 (+)
LOC110531781 LOC106577736 coding downstream 247836 24456658 ~ 24484458 (+)
LOC110531785 plap coding downstream 392512 24601334 ~ 24624296 (+)
LOC110531793 LOC106577583 coding downstream 511203 24720025 ~ 24726878 (+)
LOC110531798 LOC106577580 coding downstream 526843 24735665 ~ 24770025 (+)
G784382 NA non-coding upstream 33813 24173142 ~ 24173363 (+)
G784271 NA non-coding upstream 165692 24038627 ~ 24041484 (+)
G784277 NA non-coding upstream 181164 24025802 ~ 24026012 (+)
G784269 NA non-coding upstream 189035 24017904 ~ 24018141 (+)
G784262 NA non-coding upstream 212787 23994189 ~ 23994389 (+)
G784387 NA non-coding downstream 37826 24246648 ~ 24248520 (+)
G784437 NA non-coding downstream 67222 24276044 ~ 24278695 (+)
G784980 NA non-coding downstream 214181 24423003 ~ 24423272 (+)
G784995 NA non-coding downstream 223133 24431955 ~ 24432190 (+)
G785021 NA non-coding downstream 238043 24446865 ~ 24447152 (+)
LOC110531763 LOC106577738 other upstream 368062 23834071 ~ 23839257 (+)
LOC110531761 LOC106577604 other upstream 403039 23802151 ~ 23804811 (+)
LOC110531760 LOC106577603 other upstream 427675 23765275 ~ 23780276 (+)
gba3 LOC106577614 other upstream 1099137 23105173 ~ 23111380 (+)
G785138 NA other downstream 373565 24582387 ~ 24582877 (+)
LOC110531788 LOC106577570 other downstream 721529 24872772 ~ 24952098 (+)
LOC110531825 LOC106577732 other downstream 1318851 25525371 ~ 25532692 (+)
G786091 NA other downstream 1336409 25545231 ~ 25546967 (+)
G785962 LOC105020693 other downstream 1504175 25712997 ~ 25742909 (+)

Expression


Co-expression Network