G785198 (LOC100380740)



Basic Information


Item Value
gene id G785198
gene name LOC100380740
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 24773763 ~ 24818004 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence


>TU894263
CTCGTCCTCAGTGCAAGGCAGGTACTGGTCCACCAGGCTCTCGGAGGTGGTGAGTGCCGTGTCCATTCCGCTGCTGACCATCTGGGCCACACGGCTCTCCATCACCGTATTCACGCTGCCGCTGACAGCAGCCCGGGTCATCTGCATACCATCCTGGACCGCAGCACGAGTCATCTCCACGCCGTCCTGCACGGCACCCCTGGTCCGGTCCACTGCATTGGTCAAGGTGTGGGACACACTGTCCTTGGCCCCTGTGACGGTGTTGGACATCACGTCTTTGGCACCGGTCACTGCATACTTGGCGTTGGCGACAATCTAGACAGGAAGAATGGGATAGGGAGAAAAAAGGTTGTTTTTCATTTAACCAGGAAAGTCACATTGAGATTGAACTTAATTTTTCAAATGAGTGAGTCCTGGCCTTTGGATGACCACTGACTGACTAGACACTTGCTTTATGACAGAGGGAGAGCCCGGTCCAAATAGATGATACGTCACTGATTTTGACACACAGGTTATGAGTCATTGCTCCTCCCTCTATGGTTGGCCAATCTGACTGGCATCCGCTTGATTCATTGTGAAATGCGGTGTTGCGTTGTGTCATTCGGTACCAAGTAATAACTGGGGAGTGAGAGTCATATACCTGCTCAGAAGGCTGGTGCAGGATTGGCAAGGTCTTCTCAATCTTATCCAGACCTTTGCAGGCCAAGTCATTAGCCATGGAAACTGGTGGCAGAAAAAGAGGGCATAACATTATAAGCAAAATGTATCACATTCAAGGTTGGGAATGGAGAGTCACAAATTGTAGCACTACAGAAGAATACTAAAAAAGTGTTACTGGTTCAAGACAAGACATAAGATGTGATTACTAGGTAAAAGGTTATGTTGTTGAGCAACAGCTCATAGATGACTGGATGGACTTTCTGGTCCTTACACAATTAGGAAGTGTAACTCAATATCTCTTTCCACGATCTaatgctgagcgattaaccaatATTTCCGGGATTTTCggttattaaacaactaattgaccgatgttggttcaattacttgaattccatttaCTTCGGGAGTTTTGTGAGCCCAACGCGCCGTTTCACTAGAGAAAATTCTAATCATTCACGAGAGAAATAAACTCAATAACTATGTGGGTCGCTGGGCTAACGCGAGTTGTAGTTTTCAGTAAGCTAATATTCAACCTATTTCAGTGCAGAAACGTGGTAATTAACgtcaatgaccataatccattgcgccaTTTTTGTCCGGCTCAGGCATAGATGGATACACTTTTAAGCCTAATACGTTAGGTTAGATACAAACACCGCACAGACCGCAAGAGATAGAGACAGTTCGTGATAGTTTGCCTTATCTTTGAAGAAACAGTACAATTATTTTGTTAGACAGTTCTgcagctagcctagctaaatTGGGTTGCTGAGAAAtataataatacataaAAAAGCCCTGCCTATTTGTTTATAATCGAAACCAAACTGACCTAGAAAAGCACAGTATTTTTTGTAATAAGCATATGTTTAAAGCCTTATACTAGAAATTCCATTCTGGCAAAGCGCTTGCTTTTCCATTTACAGCTCTCCAGATTTGACCACCACATAGAAAATTAATCAAATAGATTAAACTCAATATGAAGGTCCACATTAGTGAAAATATACCAGGTGGCTATAGATTTGGAGATGGCTACAGATTCTTACTTTGTGGCTCCAGCTTGCCGATGATGGGTGCTGCACCGGTGAGCGCTGCAGTGGTGAGGTTCCTAACCCCCTGCTCGGCCACCTCACACATAGACTTGAGGTAGGGGTGGTTATCCTTGGTGGTGCAGTAGGCACTGGACACCATGTCATAGGTGGAGCTAACCAATGGGAGGCTGGTCACCCTCTCAACCACATTCTGGTGAGAAATTGAGTTGAAAATGGATGTTAGAACACTGCGTGTTACAATATCTCAAGAGTAATGTCAGCAATGATACAAGTAGAAACCCTAAGTATGCTATAGGCTTCTGAATGTATAGATTTTCCTTCAGATTTAAAATGAGAAACCTAACCCACCTGGGGTCCAAAGGATCAATACCAAGCAGCTCCTGACTAAAGTTGGCTACTGTAGTACAACACTTTAACTTGCTATCCTTTATCATAACATTGGACCCgtaaacacacactcaaaaataAAGACACACCTATAACCAAGCCAATTGAATGTCAACTATCTGAGGAGTTGTAGCCTATCATTTTCTGTATATGCACTTATGTCCTGTTTCATTATCAGCTGGCATACACTACTTTGATCCGTTTCACTCCCCAAAAGAGACATACCTGGTTATTGACGACTTCAACGACTTCCATGTCTGCAAACCTAAACAAGAGGAGAAAGACATTCATGTTATGGACATTTCATTTCTTTCAACAACGCaaaaaataatgttattttcTGCTACATTGCTTTGATCAACTCACAAGGAAAAAATACGATTTAATATTTCTACATCATTATGTCTACTCAATTATCTACCCAAACAACATCAGGGAAAGTGATATTGATTGATACAGTGTAGCAGCAAACGTTACTTACTGTATGCTGTCAAATTCGAAAGAGGAACTCTCGCGTTCAGACAAATTTCCACCAAATTGGTTGATCACGAAATCAAATAAACACAAAAGTATGATAATAAAAAAATGGAACAAGGTTACCTACCACGTTAGTTGGTTAATTTTGGTGAATGATGATGATCCCAGCAGTGTAATAACTTACTCCGTTTCAGGTTTGATTTGATTGTGAACTAACAACGTCCCATTTATAGTATCTGCTTCTCGCGAGATATTGCTAATAACTTGACGTAACCGCCTCAAAAAATTATAGGGCAAAGGTAACGAGGGGGAAAATGGCAGGGGATTTCCTAGATACATGAATGGCCTGACACAGTCCTGCATCAGTTGAGGATAAACGATGTCAGACATTTAACACATTGCATGTGGTAGCTTCTTACACTAACAACCTCTATAGTGGATATCCCATAGAtgttatatttatttttgtaggATTACTGGGATAACATGTATTCGAATACGTAATGTACTGCTGTTTGGATTGTATTCCACATTCATTCAGAGATTCCCTTTTAATAACCCTTAAAGTAGGCTGTGGCCATTTCGAGAATACATCCCTAGCCAAAAAGTCATCGAATTTCATAGACTGACGGGCAATTGAACCTGGGTTTTGCGGTACTTGAGTCTTTACAATGAGGGGTGTCAGAAGAACGGATACTTTTATCAAACCATTTAGGCTGTATGACCTGACTCTGTGTGTTACACTATAATTACAATGACTGTAATACGGTGTAATTCATACTTAGACTATGAATCATCATGCCATGTGATTTTGGAATGCAGTATTACTCAATGAACTATTCCCCAGTTGGCCGTCATTTTTGACCTTGCTCAAAAGTCTGGATTAAAGAGATATTGGACTAAAATAGACGTTTCTACATAACTGAACCCCCTTTCCTTAGCCTTTTATATTTTGGAAGTAGTGGTAAAGTAGGTTAAACCCTGAGCACCATGGGTAAATAGGTGGGCAAATTGTAATGAAAAAGGGGGGGGGAAATGATCTAGAGTAATTAAAAGGTGGGTAAAAGCTaagtttaccctccactacatcaaTAGTTCTAAGTTGTAATAGGCTAGATTTGACCCTTCCTATGACTAAGTGACGTTTGTGATTACTTTGCTGTTTTGATCTGGACTATAATCCAATCACATAGTGTATTACAATCCAGAAGGTTCCATCATATAATTTTATTTGCCTGGCCTGatgtgatgtcaagcaaagtacAACCTGTGGACCAAGAACAATGAATGTCGTCACTTTATTGATGCACTTTGTGATGTCACCGTCAACTGTACAGAATCAGTAGGCCTACATAGCATGGACAATAAGGGATATTTGACAGGTTACAGTTGTCTCGAAGCACATAATACATGTGTAGGTTTGTGTTTTTGTCACGTTGGTTTTCGCCGTTTGGCTTAGGCTATGTCTCATGTGACATGAGAAACTGACAAGATTACATATTTGTTCAGAATGTGGTAggttttgtaatccaactttataTAAATGTTTACCTAGTGTTGCTAGTAGTGAAAGCATCTTCAATGGCCTGTTGAGTGTGATCAAAGTTCATTGTCCTTATTTGACTTCTCTGACCGCATCTGAagaaagagagagagagagagagaga

Function


NR:

description
perilipin-2-like isoform X1

GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
TU894263 True 4246 lncRNA 0.41 3 24773763 24818004

Neighbor


gene id symbol gene type direction distance location
LOC110531798 LOC106577580 coding upstream 3738 24735665 ~ 24770025 (+)
LOC110531793 LOC106577583 coding upstream 46885 24720025 ~ 24726878 (+)
LOC110531785 plap coding upstream 149467 24601334 ~ 24624296 (+)
LOC110531781 LOC106577736 coding upstream 289305 24456658 ~ 24484458 (+)
LOC110531780 bank1 coding upstream 370156 24369829 ~ 24403607 (+)
LOC110531795 LOC106577574 coding downstream 7295 24825299 ~ 24845982 (+)
si:ch211-119e14.1 LOC106577735 coding downstream 29654 24847658 ~ 24851652 (+)
trnaa-cgc NA coding downstream 33804 24851808 ~ 24851879 (+)
dtx4a LOC103369650 coding downstream 34142 24852146 ~ 24866684 (+)
LOC110531800 LOC106577573 coding downstream 51087 24869091 ~ 24871866 (+)
G785196 LOC100380740 non-coding upstream 1960 24705450 ~ 24771803 (+)
G785182 NA non-coding upstream 119894 24653558 ~ 24653869 (+)
G785033 NA non-coding upstream 288214 24485101 ~ 24485549 (+)
G785046 NA non-coding upstream 297699 24475761 ~ 24476064 (+)
G785026 NA non-coding upstream 321691 24451800 ~ 24452072 (+)
G785404 NA non-coding downstream 6613 24824617 ~ 24824840 (+)
G785410 NA non-coding downstream 9880 24827884 ~ 24828109 (+)
G785433 NA non-coding downstream 80155 24898159 ~ 25000005 (+)
G785638 NA non-coding downstream 227420 25045424 ~ 25061013 (+)
G785695 NA non-coding downstream 319839 25137843 ~ 25143127 (+)
G785138 NA other upstream 190886 24582387 ~ 24582877 (+)
hacd4 hacd4 other upstream 686437 24077880 ~ 24087340 (+)
LOC110531763 LOC106577738 other upstream 934649 23834071 ~ 23839257 (+)
LOC110531761 LOC106577604 other upstream 969626 23802151 ~ 23804811 (+)
LOC110531760 LOC106577603 other upstream 994262 23765275 ~ 23780276 (+)
LOC110531788 LOC106577570 other downstream 112347 24872772 ~ 24952098 (+)
LOC110531825 LOC106577732 other downstream 709669 25525371 ~ 25532692 (+)
G786091 NA other downstream 727227 25545231 ~ 25546967 (+)
G785962 LOC105020693 other downstream 894993 25712997 ~ 25742909 (+)
G786218 NA other downstream 1140080 25874527 ~ 25958867 (+)

Expression



Co-expression Network