G785483


Basic Information

Item Value
gene id G785483
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 24828376 ~ 24828958 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU894599
CCGTAGATCATCCGAACACGCTTGCTGCTAAGGAAGGAACAAATGTTTTTTGAGAAGTCTTCGCGTGATCGTAACCCTGTTAGATAAGTAGTTGCTTCTGGTTATAATAGCCTGACGATATCCAGTACATAACTTAAGTTCACAagtcacaaaaacaagaaaagtaaTAGTAAGACTGAACAACCGTAGAATTTCGTTTGTCACTTGAGCTTGCTAGTTAAATGGCTAACCGGCGGTGATGTGTCGGTAGGTATATTGGAATATTATTGAGCATCTTCCCATTGAAAGCCTAAAGCAGACAAAATAAGTGAGAGGAAGTACATGACACCACAAAGTCCGTTTTAGTACTTTTCCAACAGCAAGGTGTGTTAGAGCAGGTCTAAAACAAGCCTGGACACCCAGTAACTGTCCAGGAGGATTTGTTTAGGCTACAGTTGCATTTAAAAAATGAGACCAATGTAGACAAATTACTTAATTCATAAAACTACAGATAGTTTATAGAAAATGTATCTCTCTCACATTTCACCCTTGTGTGGTGTTTGGGACTGTGGGGCCCATTTTAAATGTTTACTCAAATAAAAAT
>TU894593
TTTTTTGAGAAGTCTTCGCGTGATCGTAACCCTGTTAGATAAGTAGTTGCTTCTGGTTATAATAGCCTGACGATATCCAGTACATAACTTAAGTTCACAagtcacaaaaacaagaaaagtaaTAGTAAGACTGAACAACCGTAGAATTTCGTTTGTCACTTGAGCTTGCTAGTTAAATGGCTAACCGGCGGTGATGTGTCGGTAGGTATATTGGAATATTATTGAGCATCTTCCCATTGAAAGCCTAAAGCAGACAAAATAAGTGAGAGGAAGTACATGACACCACAAAGTCCGTTTTAGTACTTTTCCAACAGCAAGGTGTGTTAGAGCAGGTCTAAAACAAGCCTGGACACCCAGTAACTGTCCAGGAGGATTTGTTTAGGCTACAGTTGCATTTAAAAAATGAGACCAATGTAGACAAATTACTTAATTCATAAA
>TU894595
CCGTAGATCATCCGAACACGCTTGCTGCTAAGGAAGGAACAAATGTTTTTTGAGAAGTCTTCGCGTGATCGTAACCCTGTTAGATAAGTAGTTGCTTCTGGTTATAATAGCCTGACGATATCCAGTACATAACTTAAGTTCACAagtcacaaaaacaagaaaagtaaTAGTAAGACTGAACAACCGTAGAATTTCGTTTGTCACTTGAGCTTGCTAGTTAAATGGCTAACCGGCGGTGATGTGTCGGTAGGTATATTGGAATATTATTGAGCATCTTCCCATTGAAAGCCTAAAGCAGACAAAATAAGTGAGAGGAAGTACATGACACCACAAAGTCCGTTTTAGTACTTTTCCAACAGCAAGGTGTGTTAGAGCAGGTCTAAAACAAGCCTGGACACCCAGTAACTGTCCAGGAGGATTTGTTTAGGCTACAGTTGCATTTAAAAAATGAGACCAATGTAGACAAATTACTTAATTCATAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU894599 False 583 lncRNA 0.38 1 24828376 24828958
TU894593 False 438 lncRNA 0.38 1 24828476 24828913
TU894595 True 483 lncRNA 0.39 1 24828476 24828958

Neighbor

gene id symbol gene type direction distance location
LOC110532976 LOC106577575 coding downstream 8952 24803312 ~ 24819424 (-)
LOC110531801 LOC106577577 coding downstream 36184 24783891 ~ 24792192 (-)
LOC110531797 LOC100380740 coding downstream 51022 24770432 ~ 24777354 (-)
LOC110531803 NA coding downstream 68597 24752037 ~ 24759779 (-)
LOC118966243 NA coding downstream 114605 24713641 ~ 24713771 (-)
LOC110531808 cpz coding upstream 415239 25244197 ~ 25262199 (-)
LOC110531809 gpr78 coding upstream 433807 25262765 ~ 25267286 (-)
trmt44 trmt44 coding upstream 465080 25294038 ~ 25309252 (-)
LOC110531812 LOC106577560 coding upstream 509623 25338581 ~ 25365749 (-)
LOC110531813 LOC106577559 coding upstream 539234 25368192 ~ 25377186 (-)
G785482 NA non-coding downstream 1389 24826731 ~ 24826987 (-)
G785481 NA non-coding downstream 1833 24826136 ~ 24826543 (-)
G785398 NA non-coding downstream 19644 24807757 ~ 24808732 (-)
G785397 NA non-coding downstream 20118 24806170 ~ 24808258 (-)
G785370 LOC106577580 non-coding downstream 63170 24741627 ~ 24765206 (-)
G785497 NA non-coding upstream 14634 24843592 ~ 24845968 (-)
G785501 NA non-coding upstream 23262 24852220 ~ 24852509 (-)
G785503 LOC106608654 non-coding upstream 28016 24856974 ~ 24857349 (-)
G785513 NA non-coding upstream 48774 24877732 ~ 24878251 (-)
G785514 NA non-coding upstream 49390 24878348 ~ 24878735 (-)
G785329 plap other downstream 209323 24605485 ~ 24619053 (-)
LOC110531775 LOC107706756 other downstream 619721 24206453 ~ 24208980 (-)
frem1a frem1 other downstream 980946 23845242 ~ 23876940 (-)
G784651 NA other downstream 1020104 23806558 ~ 23808272 (-)
G784652 NA other downstream 1026692 23800783 ~ 23801684 (-)
G785578 NA other upstream 134114 24963072 ~ 24965274 (-)
G787211 NA other upstream 461957 25290915 ~ 25291471 (-)
G787386 NA other upstream 693080 25522038 ~ 25619623 (-)

Expression


Co-expression Network