G785497


Basic Information

Item Value
gene id G785497
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 24843592 ~ 24845968 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU894626
TGTTTATTGGAAGAGTCGCACAGTGGAGTGTCATTTTCATCCCCTATTGGTTCACAACCACACAAAACATGTGTAGTATGACAGTGAATAAATACATATTAATCTAGTAAATAAATTAATcatgtgatgagcttgatgtgagctagcctggtcccagacccaTTTGTACCGTCTCGCCAACTCCTGTGGTCGTTGTCGACAATACAGCCAAAAGCAGATCTGGGATAAGGCTAGATATGAACTGTACCCGAGGGCTGCAAAACGGTGAAGTATAAACTGCTTACAAAtgcaaaaaatctaaatgtaacacAGTGAATATTCTTTTTCAGTTCCGTCTAACAGTTGAGCATTGTATGCCCTTTCTTTCCTATCTTCAAAGACAAACCACAGCTGCTGCTATATCAGTCTAAGACAGTGGTATTCAAAATCAGCGTCAAATCAGTATTCattatttgccacattttttggggGTAAGATTAtagattattgtatgggacaatatacAAACCTTTTTGAGAAAGATCAtttgaaaaatacaattttattgggtAAATGTATTGCGGATGGTTGTGCACGTAAAAATCATAATGTACAGATTTGAAGGTTGTTATTAGTTTTCGGGGTAGGGTCGTGAGAAATACTTGCGGAAAAAATGGAGTCCCAGCtaaaaaaagtttgaataccACTGGTCTAAAACGATTATATTTAGTTCTGACTTGGAATACATCATTCACACAGTAAAAAAACTCCTCCTCAAATTCCATTGCAACTTTCTTTAGTTCTGTGCCTCATGACAGTCATAGAACTGCTATGATTTAAATTGTATGATATTAAGTTTGTTCTACTGAGAACACATTTTCTGAGGTAACACTTCACTTGAACTCTCTGTTATAAACTGTCATTGGAGTTTACAACACCTTGGGACAAATTATACTGCATGTTGCTAGTCAGTCTGCTTTTGGCTTCACCAAAGGGGGATCATTCACCTAAGACAACTTAAGTTGGAGAGCACAAATGTAGTGTTACCTTCTCTTCGAAGGCAAAAAATTACATGATAGCAATCATTTAAGGTACCTCCAACTCAAGTCCTTCACATCATTTGTAAGAAAAATCCCCACATCAAAATCAACATTATTTGGAAATGGAccaatgttttttctttgtatgtCGACATAGGCGCCATACAGCATAGTTTAATACAACTTACCCAATCGCAATTAACCCGTGCAGTTTTGTAAACAGTATATATCCATTTTAGCATATAGATTTATATTGTTAATACCAATGGTCTGACTTCATCACTTCAGCTAATCTAGGGTAAAAGATTCCTATGATGGAATGGAAAAATAATGTATAGATGCATACTTGTACAAACGTATAAGTACGAATAATAAACTGCAGTATGTATGACGTTTGATATGCATCCCGGTTAGCAGCTCTAACTACCCGATTAAACGATCCCTAACGGATTCACAATGTGAGTGCTTCAATGAGAGCAGCAACTGGAAATGACCTGCCTATCTACTTGACAACACTTGTTGAGGGTGTATTCATATTATACAAAATAATGTAGACAGATGTGCCATTTTGTAAATGTGCCAAATTAACATAGACCTTTGTGCCAGTTGTCATACTGCATGGCATAAGGATTCGTGAGTAGGCTACAATTGAATCCTCATGTCTTCAGTTTTGTAGTGATACACAATATTGGATACTTAAATGTATACACCTTCAAATAGTGTCACCATTAACGCTCCTTAATAAAAACCGGTAACATGTCTTACTGCAGTATGGAAGTCCTATGCAGATTATCCCCCTTCATCCTATATCACCCACTATCCAACTGAATCAGCATCTAAAGAGTTGTAGGGTGCATCTAAATGGTGTTTCCTTCTTTTCTCGTGTCCTCCTCTCTACgaggagagaggaggacacgAGGAAATACAATTGAGATTCACCCGCAGAATCCAATTGGTCTCTGTACACCTTCACTATAATAGTTCACCTTATTCTCGACCCCTCTGTGATTCCCACAGTTTAGTAACTCAGCTACACTTCACTACATCCTCCCACTTGCACAGAGCTTAAGGTACTGTTGTTGATTCTAGTAAGGCTATGGTCTATGGAGTTTTAGTAAGAACACCCTTTGGGTGTTGTGGTGACGCCCCTCTGCCAATCAGACGTCCCCGTCCTCGATGCGGGCCAGCTGCCTCTCCAGCAGCTCGATCCTTTGGCCCTGGGCCAAGACCACCGAACGTAGGGCCTTCACCTCCGCTAGCACCTCGCTCAGCACTTC

Function

NR:

description
coronin-1B-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU894626 True 2296 lncRNA 0.39 2 24843592 24845968

Neighbor

gene id symbol gene type direction distance location
LOC110532976 LOC106577575 coding downstream 24168 24803312 ~ 24819424 (-)
LOC110531801 LOC106577577 coding downstream 51400 24783891 ~ 24792192 (-)
LOC110531797 LOC100380740 coding downstream 66238 24770432 ~ 24777354 (-)
LOC110531803 NA coding downstream 83813 24752037 ~ 24759779 (-)
LOC118966243 NA coding downstream 129821 24713641 ~ 24713771 (-)
LOC110531808 cpz coding upstream 398229 25244197 ~ 25262199 (-)
LOC110531809 gpr78 coding upstream 416797 25262765 ~ 25267286 (-)
trmt44 trmt44 coding upstream 448070 25294038 ~ 25309252 (-)
LOC110531812 LOC106577560 coding upstream 492613 25338581 ~ 25365749 (-)
LOC110531813 LOC106577559 coding upstream 522224 25368192 ~ 25377186 (-)
G785483 NA non-coding downstream 14634 24828376 ~ 24828958 (-)
G785482 NA non-coding downstream 16605 24826731 ~ 24826987 (-)
G785481 NA non-coding downstream 17049 24826136 ~ 24826543 (-)
G785398 NA non-coding downstream 34860 24807757 ~ 24808732 (-)
G785397 NA non-coding downstream 35334 24806170 ~ 24808258 (-)
G785501 NA non-coding upstream 6252 24852220 ~ 24852509 (-)
G785503 LOC106608654 non-coding upstream 11006 24856974 ~ 24857349 (-)
G785513 NA non-coding upstream 31764 24877732 ~ 24878251 (-)
G785514 NA non-coding upstream 32380 24878348 ~ 24878735 (-)
G785515 NA non-coding upstream 32932 24878900 ~ 24879204 (-)
G785329 plap other downstream 224539 24605485 ~ 24619053 (-)
LOC110531775 LOC107706756 other downstream 634937 24206453 ~ 24208980 (-)
frem1a frem1 other downstream 996162 23845242 ~ 23876940 (-)
G784651 NA other downstream 1035320 23806558 ~ 23808272 (-)
G784652 NA other downstream 1041908 23800783 ~ 23801684 (-)
G785578 NA other upstream 117104 24963072 ~ 24965274 (-)
G787211 NA other upstream 444947 25290915 ~ 25291471 (-)
G787386 NA other upstream 676070 25522038 ~ 25619623 (-)

Expression


Co-expression Network