G785638


Basic Information

Item Value
gene id G785638
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 25045424 ~ 25061013 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU894789
CGCAGAGTAGGGGGAGgaagggaggtggccctggaccgactgaacaccgtgcacagatcgtgatattcctccggcacccctgtcaaatcaccaggctcctcctgtgaagaagagacagaggaaacaggagggatagcagacattaaacatttcacatgacaagagacgttccaggagaggatagaattactagaccaattaatggaaggattatgacaaactagccagggatggcccaaaacaacaggtgtaaaaggtgaacgaaaaattaaaaaagaaatggtttcgctatgattaccagaaacagtgagggttaaaggtagcgtctcacgctgaatcctgg

Function

NR:

description
PREDICTED: retrotransposon-like protein 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU894789 True 343 lncRNA 0.47 2 25045424 25061013

Neighbor

gene id symbol gene type direction distance location
trnaa-ugc-31 NA coding upstream 18783 25026571 ~ 25026641 (+)
LOC110532977 LOC106577569 coding upstream 27979 24971751 ~ 25017445 (+)
LOC110531794 LOC106577572 coding upstream 73964 24952826 ~ 24971460 (+)
LOC110531788 LOC106577570 coding upstream 93326 24872772 ~ 24952098 (+)
LOC110531800 LOC106577573 coding upstream 173558 24869091 ~ 24871866 (+)
LOC110531806 LOC106577568 coding downstream 42840 25103853 ~ 25108225 (+)
LOC110531807 hmx1 coding downstream 133768 25194781 ~ 25197585 (+)
LOC118966019 LOC106577563 coding downstream 254349 25315362 ~ 25324106 (+)
LOC110531811 LOC106577563 coding downstream 262986 25323999 ~ 25339758 (+)
LOC110531816 NA coding downstream 306352 25367365 ~ 25369664 (+)
G785433 NA non-coding upstream 45419 24898159 ~ 25000005 (+)
G785410 NA non-coding upstream 217315 24827884 ~ 24828109 (+)
G785404 NA non-coding upstream 220584 24824617 ~ 24824840 (+)
G785198 LOC100380740 non-coding upstream 227420 24773763 ~ 24818004 (+)
G785262 NA non-coding upstream 235162 24809714 ~ 24810262 (+)
G785695 NA non-coding downstream 76830 25137843 ~ 25143127 (+)
G785793 NA non-coding downstream 98299 25159312 ~ 25164194 (+)
G785825 NA non-coding downstream 121437 25182450 ~ 25182725 (+)
G785851 NA non-coding downstream 142075 25203088 ~ 25203310 (+)
G785886 NA non-coding downstream 166804 25227817 ~ 25228103 (+)
G785138 NA other upstream 462547 24582387 ~ 24582877 (+)
hacd4 hacd4 other upstream 958098 24077880 ~ 24087340 (+)
LOC110531763 LOC106577738 other upstream 1206310 23834071 ~ 23839257 (+)
LOC110531761 LOC106577604 other upstream 1241287 23802151 ~ 23804811 (+)
LOC110531825 LOC106577732 other downstream 466660 25525371 ~ 25532692 (+)
G786091 NA other downstream 484218 25545231 ~ 25546967 (+)
G785962 LOC105020693 other downstream 651984 25712997 ~ 25742909 (+)
G786218 NA other downstream 897071 25874527 ~ 25958867 (+)
G786496 LOC106577539 other downstream 1352099 26413112 ~ 26413532 (+)

Expression


Co-expression Network