G785851


Basic Information

Item Value
gene id G785851
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 25203088 ~ 25203310 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU895020
ttattctttaaaacattattcaagctctgtcatacTGGTTTTTGATCATTGCCATGGTCTTGCCATAGATCTTgccaagcagatttaagtcaaaactgtagttaggccactcaggaacattcactgtcttcttggtaagcaacttcagtgtacatttggccttgtgttttaggttattgtcctgctgaatggtgaatttatctcccagtgtctggtggaaagc

Function

NR:

description
Transposable element Tcb1 transposase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU895020 True 223 lncRNA 0.39 1 25203088 25203310

Neighbor

gene id symbol gene type direction distance location
LOC110531807 hmx1 coding upstream 5503 25194781 ~ 25197585 (+)
LOC110531806 LOC106577568 coding upstream 94863 25103853 ~ 25108225 (+)
trnaa-ugc-31 NA coding upstream 176447 25026571 ~ 25026641 (+)
LOC110532977 LOC106577569 coding upstream 185643 24971751 ~ 25017445 (+)
LOC110531794 LOC106577572 coding upstream 231628 24952826 ~ 24971460 (+)
LOC118966019 LOC106577563 coding downstream 112052 25315362 ~ 25324106 (+)
LOC110531811 LOC106577563 coding downstream 120689 25323999 ~ 25339758 (+)
LOC110531816 NA coding downstream 164055 25367365 ~ 25369664 (+)
LOC110533008 NA coding downstream 192969 25396279 ~ 25397954 (+)
LOC110531817 LOC106577558 coding downstream 196199 25399509 ~ 25410386 (+)
G785825 NA non-coding upstream 20363 25182450 ~ 25182725 (+)
G785793 NA non-coding upstream 38894 25159312 ~ 25164194 (+)
G785695 NA non-coding upstream 59961 25137843 ~ 25143127 (+)
G785638 NA non-coding upstream 142075 25045424 ~ 25061013 (+)
G785433 NA non-coding upstream 203083 24898159 ~ 25000005 (+)
G785886 NA non-coding downstream 24507 25227817 ~ 25228103 (+)
G785930 NA non-coding downstream 66114 25269424 ~ 25269834 (+)
G785934 NA non-coding downstream 72095 25275405 ~ 25275691 (+)
G785940 NA non-coding downstream 80456 25283766 ~ 25284033 (+)
G785949 NA non-coding downstream 89223 25292533 ~ 25292819 (+)
LOC110531788 LOC106577570 other upstream 250992 24872772 ~ 24952098 (+)
G785138 NA other upstream 620211 24582387 ~ 24582877 (+)
hacd4 hacd4 other upstream 1115762 24077880 ~ 24087340 (+)
LOC110531763 LOC106577738 other upstream 1363974 23834071 ~ 23839257 (+)
LOC110531761 LOC106577604 other upstream 1398951 23802151 ~ 23804811 (+)
LOC110531825 LOC106577732 other downstream 324363 25525371 ~ 25532692 (+)
G786091 NA other downstream 341921 25545231 ~ 25546967 (+)
G785962 LOC105020693 other downstream 509687 25712997 ~ 25742909 (+)
G786218 NA other downstream 754774 25874527 ~ 25958867 (+)
G786496 LOC106577539 other downstream 1209802 26413112 ~ 26413532 (+)

Expression


Co-expression Network