XLOC_027021


Basic Information

Item Value
gene id XLOC_027021
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 4166322 ~ 4167787 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00053285
CAGGGTATAAAATGCCACAGACATGCAGGCACTGGCCTTTTGTGAAGATGTGGACTTGAGATCTCTGGATCAAAGCTGCAGGAGAAGCAATTTGATTCTGGCATGGAGTTCTTCTACAGCTGACTTATTCACCTGACTCATTTCTGAACATCTGTTGATCTTCAATCCTTCTAATAATGCCGCTGTCAACACTTAACATTTTGCAAGTCTTTTAAAGCCTTGTAGTCTTCTAACGAGGTGGTTATggccctttaagttttttttttggcaaaatgtTTAGTGTTTGAGGCATCATTGAGTGGTTAAAGTTTGTTTTGGATGCATAAAATGTGCCCAGTCTGtataatagtgcaaaataaaattaaatgtgtttgtgtggtttaTGATTTTCAActgaattataatttaaaaaaagtgcttCTAGCAATTATCTAAAACTTGAggtctgcagctctgcacaattagCTCAATCCACCTCCAACTAACCTGCTTTTAATCTGCAGCTGTTTCTAACTCCTTGATTAGTTGaagcagctgtgtttgattagggtggaagcaaaactgcagagctgcatcTCCAGCAAGAGAGTTGGCACTTACCTACAGATTTTTCATGTTTTGAGAATTTATTTTATCAGGATATAAACTAGTTTCTGTCTTTGctgaactaaaaacaaacactttttgtGCAAAAAAATCATAGTGACTAATCATATCCCAAAGCTTATTTTAGCTGCTCATGTGGTTTTTCACAATCTGGCTGGTTTAAGCATATTGAAGGTCTTGAGCTGATGGCTGAAAATGGCAGAATGGAATCCTGCTGAACCACAAATTTGGATTGAGCTGGCTAGGTTTTCATTttaaagtattgtttttttttttttttttttttgtgactaatttctagttttttttttcctagtgTAATCTGC
>TCONS_00057551
GTGGACTTGAGGTAAGATGCTAAGATCTCTGGATCAAAGCTGCAGGAGAAGCAATTTGATTCTGGCATGGAGTTCTTCTACAGCTGACTTATTCACCTGACTCATTTCTGAACATCTGTTGATCTTCAATCCTTCTAATAATGCCGCTGTCAACACTTAACATTTTGCAAGTCTTTTAAAGCCTTGTAGTCTTCTAACGAGGTGGTTATggccctttaagttttttttttggcaaaatgtTTAGTGTTTGAGGCATCATTGAGTGGTTAAAGTTTGTTTTGGATGCATAAAATGTGCCCAGTCTGtataatagtgcaaaataaaattaaatgtgtttgtgtggtttaTGATTTTCAActgaattataatttaaaaaaagtgcttCTAGCAATTATCTAAAACTTGAggtctgcagctctgcacaattagCTCAATCCACCTCCAACTAACCTGCTTTTAATCTGCAGCTGTTTCTAACTCCTTGATTAGTTGaagcagctgtgtttgattagggtggaagcaaaactgcagagctgcatcTCCAGCAAGAGAGTTGGCACTTACCTACAGATTTTTCATGTTTTGAGAATTTATTTTATCAGGATATAAACTAGTTTCTGTCTTTGctgaactaaaaacaaacactttttgtGCAAAAAAATCATAGTGACTAATCATATCCCAAAGCTTATTTTAGCTGCTCATGTGGTTTTTCACAATCTGGCTGGTTTAAGCATATTGAAGGTCTTGAGCTGATGGCTGAAAATGGCAGAATGGAATCCTGCTGAACCACAAATTTGGATTGAGCTGGCTAGGTTTTCATTttaaagtattgtttttttttttttttttttttgtgactaatttctagttttttttttcctagtgTAATCTGC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00053285 False 932 lncRNA 0.36 2 4166322 4167787
TCONS_00057551 True 896 lncRNA 0.35 2 4166371 4167787

Neighbor

gene id symbol gene type direction distance location
XLOC_027020 NA coding upstream 6101 4132090 ~ 4160221 (+)
XLOC_027019 waslb coding upstream 54555 4079418 ~ 4111767 (+)
XLOC_027018 NA coding upstream 94921 4065318 ~ 4071401 (+)
XLOC_027017 NA coding upstream 102766 4059867 ~ 4063556 (+)
XLOC_027016 gpr37b coding upstream 167832 3980247 ~ 3998490 (+)
XLOC_027022 NA coding downstream 2718 4170505 ~ 4206917 (+)
XLOC_027023 NA coding downstream 54647 4222434 ~ 4223533 (+)
XLOC_027024 NA coding downstream 63849 4231636 ~ 4233420 (+)
XLOC_027025 ano2b coding downstream 99664 4267451 ~ 4358940 (+)
XLOC_027026 CU468826.2 coding downstream 208711 4376498 ~ 4387008 (+)
XLOC_027015 NA non-coding upstream 213903 3944716 ~ 3952419 (+)
XLOC_027014 NA non-coding upstream 350906 3813781 ~ 3815416 (+)
XLOC_027027 NA non-coding downstream 222122 4389909 ~ 4398440 (+)

Expression


Co-expression Network