G785950 (trmt44)


Basic Information

Item Value
gene id G785950
gene name trmt44
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 25294064 ~ 25295094 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU895125
GAGATCTGCAAACCAAATAGCAGAGTAGCTCCACTACTAAAAACTCAAATGTACTTATCTAACCAGACTTAGGTCTCAAAATTTCGATATGCGGATTTAGTTACAAGCGcaagtatgtatgtacagtggggtctgaaattattgacacctgctgataaagatgagcaataatgactgtgGAAAAAGAATCTATTAAAATACTGAGCTGTATTTTATCCCCCAAAaatgggaaattatattattttattctaATACAATTGCTCGGATAAAAAAGATTCTTATCAATAAAGTAGTCAaaggtttagtatttggtcccatattcgattcttatttacaataaaagtgactccaaaatgacacaatgcaTTATTtaacTGTAAACGCATCCAAcacgtttgtagagtcacaagcttgatgtagtcattgcgtgctaggattatgggaccaaatactcaacttttgactactttatttataaGAATCTTTAGAGATGTCAAACATTTCAACCCCTACCGTTTGAGAAAATAAAGTATTACTgctaaacaaaatctctttcctCATTTTTTTCACTTACAATATAGCTGGGTATTTCAATTATCCTTATcaaagggtgtcaataattttgggCCGCACTGTATGTATGACTGACAGTCACAGCTATTCTTGTAGCATCAACTCCACATCTAAAAAAAATAtactaaaaaaaaaattgtacaatTGAAATAAAACATTGCAATAATGGTCCAAACTGAATTGCGTGTTCAGTTGGAGTACTTCATTTTCTTGAGTGGTCTGGTGGAAGGTCGGAGATCGTCTGGGCCATGGGCGAAGGCACACTCCTCGGCCTGCAGTGGGCATCCGTGAGGGTGGTGGACGTGGAACCAGCAGGCCCGGGTCTTCAGGGCACCAGAGATTAGGTGCTTCCGCTTAGAATCAGCCCTGGTACCCTGCAGCCCTCTAGGCCTATGGGCCTGTACCCGCC

Function

symbol description
trmt44 Predicted to enable tRNA (uracil) methyltransferase activity. Predicted to be involved in tRNA methylation. Predicted to be located in cytoplasm. Orthologous to human TRMT44 (tRNA methyltransferase 44 homolog).

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU895125 True 982 lncRNA 0.39 2 25294064 25295094

Neighbor

gene id symbol gene type direction distance location
LOC110531807 hmx1 coding upstream 96479 25194781 ~ 25197585 (+)
LOC110531806 LOC106577568 coding upstream 185839 25103853 ~ 25108225 (+)
trnaa-ugc-31 NA coding upstream 267423 25026571 ~ 25026641 (+)
LOC110532977 LOC106577569 coding upstream 276619 24971751 ~ 25017445 (+)
LOC110531794 LOC106577572 coding upstream 322604 24952826 ~ 24971460 (+)
LOC118966019 LOC106577563 coding downstream 20268 25315362 ~ 25324106 (+)
LOC110531811 LOC106577563 coding downstream 28905 25323999 ~ 25339758 (+)
LOC110531816 NA coding downstream 72271 25367365 ~ 25369664 (+)
LOC110533008 NA coding downstream 101185 25396279 ~ 25397954 (+)
LOC110531817 LOC106577558 coding downstream 104415 25399509 ~ 25410386 (+)
G785949 NA non-coding upstream 1245 25292533 ~ 25292819 (+)
G785940 NA non-coding upstream 10031 25283766 ~ 25284033 (+)
G785934 NA non-coding upstream 18373 25275405 ~ 25275691 (+)
G785930 NA non-coding upstream 24230 25269424 ~ 25269834 (+)
G785886 NA non-coding upstream 65961 25227817 ~ 25228103 (+)
G786004 NA non-coding downstream 25299 25320393 ~ 25320681 (+)
G786005 NA non-coding downstream 25777 25320871 ~ 25321129 (+)
G786068 NA non-coding downstream 191318 25486412 ~ 25486645 (+)
LOC110531788 LOC106577570 other upstream 341968 24872772 ~ 24952098 (+)
G785138 NA other upstream 711187 24582387 ~ 24582877 (+)
hacd4 hacd4 other upstream 1206738 24077880 ~ 24087340 (+)
LOC110531763 LOC106577738 other upstream 1454950 23834071 ~ 23839257 (+)
LOC110531761 LOC106577604 other upstream 1489927 23802151 ~ 23804811 (+)
LOC110531825 LOC106577732 other downstream 232579 25525371 ~ 25532692 (+)
G786091 NA other downstream 250137 25545231 ~ 25546967 (+)
G785962 LOC105020693 other downstream 417903 25712997 ~ 25742909 (+)
G786218 NA other downstream 662990 25874527 ~ 25958867 (+)
G786496 LOC106577539 other downstream 1118018 26413112 ~ 26413532 (+)

Expression


Co-expression Network