G787386


Basic Information

Item Value
gene id G787386
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 25522038 ~ 25619623 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU896757
AGGAAATtgcttttatttgactttttaaAGTTCCCTGAAATGTTTCCCTTTTCCCTAAACAAAAGAGCATCATGTCTCAGCACCAAATGACATCAGCAAAAAGAGTATCCATCAGAAAACCATAAAGTAAACCAATATAAAATGTGCTTAATCAAGTATATCATAAGCACAGTATCAGAACTCTGCataggagagagaaaagacattGGACAAATGCTGGAATtagtacaaaataaaaaaaaaaacatttattgaaaacaaagaaaaaaacattctGAGAAAACAAAATCATTTAACGGTTCCTAAAAGAACTTACAAAAATAGTTCCTAGATCTGCAGTACAAAAATGGGGGAAAAAGAAAGACCAACGCCTCAATAGGACCATGATTAACAGGGAACCAGGTCAAGGGTTCAGGGGGAGGAATGAAGGCAGTGGTTATGTTTAGCAGGTATCAAAAATACTAACAGGCAATTGGCCAATTAACTGGTAACAAAGCATAGTTTCTAGGCAGGTATGACTAGTTTTAAGTGGTCCAAATCATAAAAGCACAAGCTAAAGTGCTCTTTGGGGGGCAGGTGAGGAGGAAGTCACACCAGATGGTTAAGGCCTACACTTAGGCACTTTGTGTTGTACCGAAAGTGACTGGCATGGTGGTCAGCCTATTTACCCAATCCAAACCCTAGGTCCTACACTTACACACACTTTGTATTGTACCGAAAGTGACTGGCATGGTGGTCAGCCTATTTACCCAATCCAAACCCTAGGTCCTACACTTACACACTTTGTATTGTACCGAAAGTGACTGGCATCTCAAATATAGTTACAATTCTACCATTGCACCCAAGTACTATGAGAAGGTCTGGTAACACAAATTTCCTAGATGACAATATCCATCCGGACCTTTACCATTTATCAGTGTATTAAAGAACCCCCAACTTGCAACCccaaactattcacacccctcttgttggcggaCATTTGTTGTAGTGTTAAAGCTTATTTCCAACAATTCCACATATTTTGCCATGCCTTGTGTGTTCATATAATACCAAGGGATATTATAATTTTTGGGGCGGGACCCGAAGTCCGTATTGACAACGTTCTGGTCCGGGTTTCGGACCGAGGTCAGCCTGTTGAGTATAGCTGCCTAGCTGGAGCTATTACCATCTTGCTAACACCTATCCTTTCAGACTTGTAAGAAGTGACTACATGTATTGCCTAGGGTTTGGTATTGGGCATTTACTTTGGAGTCACAATTTAATGTTGGTCTGGAATAGACAGTAGGGAAGGGCTGAGGTGTCCTGGCCTTAGTCTGAGTCGCTCCTCCCCTCCTTTGCAAGCATCCGTTTTCCGCTCTTTGGGGCCAACGCTTCTTGCTTGCGGCTCTTTGAG
>TU896758
AGGAAATtgcttttatttgactttttaaAGTTCCCTGAAATGTTTCCCTTTTCCCTAAACAAAAGAGCATCATGTCTCAGCACCAAATGACATCAGCAAAAAGAGTATCCATCAGAAAACCATAAAGTAAACCAATATAAAATGTGCTTAATCAAGTATATCATAAGCACAGTATCAGAACTCTGCataggagagagaaaagacattGGACAAATGCTGGAATtagtacaaaataaaaaaaaaaacatttattgaaaacaaagaaaaaaacattctGAGAAAACAAAATCATTTAACGGTTCCTAAAAGAACTTACAAAAATAGTTCCTAGATCTGCAGTACAAAAATGGGGGAAAAAGAAAGACCAACGCCTCAATAGGACCATGATTAACAGGGAACCAGGTCAAGGGTTCAGGGGGAGGAATGAAGGCAGTGGTTATGTTTAGCAGGTATCAAAAATACTAACAGGCAATTGGCCAATTAACTGGTAACAAAGCATAGTTTCTAGGCAGGTATGACTAGTTTTAAGTGGTCCAAATCATAAAAGCACAAGCTAAAGTGCTCTTTGGGGGGCAGGTGAGGAGGAAGTCACACCAGATGGTTAAGGCCTACACTTAGGCACTTTGTGTTGTACCGAAAGTGACTGGCATGGTGGTCAGCCTATTTACCCAATCCAAACCCTAGGTCCTACACTTACACACTTTGTATTGTACCGAAAGTGACTGGCATGGTGGTGGTCAGCCTATTTACCCAATCCAAACCCTAGGTCCTACACTTACACACTTTGTATTGTACCGAAAGTGACTGGCATCTCAAATATAGTTACAATTCTACCATTGCACCCAAGTACTATGAGAAGGTCTGGTAACACAAATTTCCTAGATGACAATATCCATCCGGACCTTTACCATTTATCAGTGTATTAAAGAACCCCCAACTTGCAACCccaaactattcacacccctcttgttggcggaCATTTGTTGTAGTGTTAAAGCTTATTTCCAACAATTCCACATATTTTGCCATGCCTTGTGTGTTCATATAATACCAAGGGATATTATAATTTTTGGGGCGGGACCCGAAGTCCGTATTGACAACGTTCTGGTCCGGGTTTCGGACCGAGGTCAGCCTGTTGAGTATAGCTGCCTAGCTGGAGCTATTACCATCTTGCTAACACCTATCCTTTCAGACTTGTAAGAAGTGACTACATGTATTGCCTAGGGTTTGGTATTGGGCATTTACTTTGGAGTCACAATTTAATGTTGGTCTGGAATAGACAGTAGGGAAGGGCTGAGGTGTCCTGGCCTTAGTCTGAGTCGCTCCTCCCCTCCTTTGCAAGCATCCGTTTTCCGCTCTTTGGGGCCAACGCTTCTTGCTTGCGGCTCTTTGAG
>TU896759
gtgggggggggGCCTACACTTAGGCACTTTGTGTTGTACCGAAAGTGACTGGCATGGTGGTCAGCCTATTTACCCAATCCAAACCCTAGGTCCTACACTTACACACTTTGTATTGTACCGAAAGTGACTGGCATGGTGGTGGTCAGCCTATTTACCCAATCCAAACCCTAGGTCCTACACTTACACACACTTTGTATTGTACCGAAAGTGACTGGCATGGTGGTCAGCCTATTTACCCAATCCAAACCCTAGGTCCTACACTTACACACTTTGTATTGTACCGAAAGTGACTGGCATCTCAAATATAGTTACAATTCTACCATTGCACCCAAGTACTATGAGAAGGTCTGGTAACACAAATTTCCTAGATGACAATATCCATCCGGACCTTTACCATTTATCAGTGTATTAAAGAACCCCCAACTTGCAACCccaaactattcacacccctcttgttggcggaCATTTGTTGTAGTGTTAAAGCTTATTTCCAACAATTCCACATATTTTGCCATGCCTTGTGTGTTCATATAATACCAAGGGATATTATAATTTTTGGGGCGGGACCCGAAGTCCGTATTGACAACGTTCTGGTCCGGGTTTCGGACCGAGGTCAGCCTGTTGAGTATAGCTGCCTAGCTGGAGCTATTACCATCTTGCTAACACCTATCCTTTCAGACTTGTAAGAAGTGACTACATGTATTGCCTAGGGTTTGGTATTGGGCATTTACTTTGGAGTCACAATTTAATGTTGGTCTGGAATAGACAGTAGGGAAGGGCTGAGGTGTCCTGGCCTTAGTCTGAGTCGCTCCTCCCCTCCTTTGCAAGCATCCGTTTTCCGCTCTTTGGGGCCAACGCTTCTTGCTTGCGGCTCTTTGAG
>TU896760
AGGAAATtgcttttatttgactttttaaAGTTCCCTGAAATGTTTCCCTTTTCCCTAAACAAAAGAGCATCATGTCTCAGCACCAAATGACATCAGCAAAAAGAGTATCCATCAGAAAACCATAAAGTAAACCAATATAAAATGTGCTTAATCAAGTATATCATAAGCACAGTATCAGAACTCTGCataggagagagaaaagacattGGACAAATGCTGGAATtagtacaaaataaaaaaaaaaacatttattgaaaacaaagaaaaaaacattctGAGAAAACAAAATCATTTAACGGTTCCTAAAAGAACTTACAAAAATAGTTCCTAGATCTGCAGTACAAAAATGGGGGAAAAAGAAAGACCAACGCCTCAATAGGACCATGATTAACAGGGAACCAGGTCAAGGGTTCAGGGGGAGGAATGAAGGCAGTGGTTATGTTTAGCAGGTATCAAAAATACTAACAGGCAATTGGCCAATTAACTGGTAACAAAGCATAGTTTCTAGGCAGGTATGACTAGTTTTAAGTGGTCCAAATCATAAAAGCACAAGCTAAAGTGCTCTTTGGGGGGCAGGTGAGGAGGAAGTCACACCAGATGGTTAAGGCCTACACTTAGGCACTTTGTGTTGTACCGAAAGTGACTGGCATGGTGGTCAGCCTATTTACCCAATCCAAACCCTAGGTCCTACACTTACACACTTTGTATTGTACCGAAAGTGACTGGCATCTCAAATATAGTTACAATTCTACCATTGCACCCAAGTACTATGAGAAGGTCTGGTAACACAAATTTCCTAGATGACAATATCCATCCGGACCTTTACCATTTATCAGTGTATTAAAGAACCCCCAACTTGCAACCccaaactattcacacccctcttgttggcggaCATTTGTTGTAGTGTTAAAGCTTATTTCCAACAATTCCACATATTTTGCCATGCCTTGTGTGTTCATATAATACCAAGGGATATTATAATTTTTGGGGCGGGACCCGAAGTCCGTATTGACAACGTTCTGGTCCGGGTTTCGGACCGAGGTCAGCCTGTTGAGTATAGCTGCCTAGCTGGAGCTATTACCATCTTGCTAACACCTATCCTTTCAGACTTGTAAGAAGTGACTACATGTATTGCCTAGGGTTTGGTATTGGGCATTTACTTTGGAGTCACAATTTAATGTTGGTCTGGAATAGACAGTAGGGAAGGGCTGAGGTGTCCTGGCCTTAGTCTGAGTCGCTCCTCCCCTCCTTTGCAAGCATCCGTTTTCCGCTCTTTGGGGCCAACGCTTCTTGCTTGCGGCTCTTTGAG

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU896757 False 1393 TUCP 0.41 2 25522038 25523512
TU896758 False 1394 lncRNA 0.41 2 25522038 25523512
TU896759 False 880 lncRNA 0.46 2 25522038 25619623
TU896760 True 1312 lncRNA 0.41 2 25522038 25523512

Neighbor

gene id symbol gene type direction distance location
LOC110531822 LOC100136445 coding downstream 37817 25451118 ~ 25484221 (-)
LOC110531820 LOC106608670 coding downstream 77787 25433815 ~ 25444251 (-)
LOC118966020 NA coding downstream 110409 25409559 ~ 25411629 (-)
LOC110531813 LOC106577559 coding downstream 144852 25368192 ~ 25377186 (-)
LOC110531812 LOC106577560 coding downstream 156289 25338581 ~ 25365749 (-)
LOC110531833 LOC105020693 coding upstream 93348 25712971 ~ 25742721 (-)
LOC110531837 cssa07h11orf68 coding upstream 164310 25783933 ~ 25785181 (-)
LOC110531840 LOC106577539 coding upstream 246367 25865990 ~ 26900452 (-)
trnaa-ugc-32 NA coding upstream 673206 26292829 ~ 26292904 (-)
LOC110531842 rasgrp2 coding upstream 1497332 27116955 ~ 27196041 (-)
G787303 NA non-coding downstream 35799 25485979 ~ 25486239 (-)
G787302 NA non-coding downstream 37387 25484394 ~ 25484651 (-)
G787281 NA non-coding downstream 73351 25447811 ~ 25448687 (-)
G787265 NA non-coding downstream 101016 25420720 ~ 25421022 (-)
G787172 LOC106577557 non-coding downstream 104057 25411943 ~ 25417981 (-)
G787421 NA non-coding upstream 12486 25632109 ~ 25632375 (-)
G787313 NA non-coding upstream 16006 25635629 ~ 25641117 (-)
G787424 NA non-coding upstream 24687 25644310 ~ 25644593 (-)
G787427 NA non-coding upstream 28610 25648233 ~ 25648605 (-)
G787432 NA non-coding upstream 41116 25660739 ~ 25662079 (-)
trmt44 trmt44 other downstream 218347 25294038 ~ 25309252 (-)
G787211 NA other downstream 230567 25290915 ~ 25291471 (-)
G785578 NA other downstream 556764 24963072 ~ 24965274 (-)
G785329 plap other downstream 902985 24605485 ~ 24619053 (-)
G787350 NA other upstream 255812 25875435 ~ 25894404 (-)
G787331 NA other upstream 263113 25882736 ~ 25930052 (-)
G787346 NA other upstream 305741 25925364 ~ 25955174 (-)
G788162 NA other upstream 1302289 26921912 ~ 26922402 (-)
LOC110531826 LOC106577553 coding upstream 30504 25554016 ~ 25564891 (-)
LOC110531827 LOC106577552 coding upstream 47104 25570616 ~ 25582248 (-)
polr2a LOC106577550 coding upstream 63018 25586530 ~ 25603298 (-)
G787405 NA non-coding upstream 46471 25569983 ~ 25570293 (-)

Expression


Co-expression Network