XLOC_027024


Basic Information

Item Value
gene id XLOC_027024
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 4231636 ~ 4233420 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00053286
AATCAGTCATACCTATTCATAACctaacaaaaaaaagtgtttgtaagCATCTGCtcttcttttacatttatttttgtttctccaCCAGAGAGAGACATTACACCACTGGAGCCCTCTATGATTTACAAGATTAAAGATGCTGCTGGACAGAGTTTCATAATAAGAatcattaaacaagcaaaaaatttttgaaataaattaaaaactgaacacATATACAAGTTAAATATGCAACCaaagtgtaacagaggccagctataGTGAAGTACTGCGCATATTACCTTTACTcctttaaaggtgctctagtaCCAAGTACACTACCTAATtcaagtcttgtcacctatcaacattttaggaacaacaaataatatctcgACTTCTAGtcaatcatttggtatcagaagtggcttatatgaaaggcctctagattacgcttattttactaaaataaaacacGATCAAgccttcatttttaattaatgaacTAGGACAGtggttgttttaaggaaaaactcacttcattttggcacattatctctgaaaacaacactatatttttttctcgtctataaaattcttcttgatttaacaatttttacattttcagatttggaTCCTAAATAAGAGAAGCATTTGTGCATTATTAGAAGTGTAACCCATTTgtccaaactttaaaaaaaaaaaaaaaaagctgagtgcTACAACTAAAATTTGCATAGTGTGCAAATGATCACACATCATGCCATTCGTCTTACACAACATCGAAAGAGAGATTCATTTCAGTGGTCACTGGAAAAaaggaaagcaaaaaaaaaattcctgtcGGACCTGAAAAACCAGTTGTGTATGAGACCATAAAAGCTCCCATGACCCGTCACTACGACAACCTCACATAAACAATAGCACAACAAAAGAGACACAGGCAGGACAGCGGAAGCACCATCCTGCCGACACATGTTTCCCAGCGTGCATTCAACTGATGTGTGAGAAGAAGGCACTAATAATGCCTTCAGGAAAAAAGTCCAGATCTCAAAGTGCCAGAGCTGCCAGCAAGAGCAAAAGAAAGCGCTCCTCCAAGAAGAGATCTGTCAGTGCCAAAGCCTCAAAGACAGATGTGGATATTTTGAGTCCAGCAGCCATGGAGAACGTTTACTACATCTCCCATAATGCTGTGGACTGTCTGGAGTTCAGAGGATTCGGCTGGCCTGGAGCCACCAAGAAGAAagggaaaaaaggaaagaaaagcaAGAAATGATTATTTGTGCCAGGTTCATCCTACATGTTGgctatttattatatatacacatatagggTGCTAGTTTCTATTTTTgactagattattttgcttatacccCATCGGCTGATTATCTTGctcgttttaaggaaaaactcggtTTAGTTTGAcgtatttctgaaaacaagacaatattaatttgcttgtctaaaaatgtttcttgatttgaaaaaaaaaaaaataataataataaagatcgTGCCAGGTTAACCTTATATGTTTGCTATttattgtacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacac
>TCONS_00057554
AAAGCTCCCATGACCCGTCACTACGACAACCTCACATAAACAATAGCACAACAAAAGAGACACAGGCAGGACAGCGGAAGCACCATCCTGCCGCTCTTTTTCTTACAGACACATGTTTCCCAGCGTGCATTCAACTGATGTGTGAGAAGAAGGCACTAATAATGCCTTCAGGAAAAAAGTCCAGATCTCAAAGTGCCAGAGCTGCCAGCAAGAGCAAAAGAAAGCGCTCCTCCAAGAAGAGATCTGTCAGTGCCAAAGCCTCAAAGACAGATGTGGATATTTTGAGTCCAGCAGCCATGGAGAACGTTTACTACATCTCCCATAATGCTGTGGACTGTCTGGAGTTCAGAGGATTCGGCTGGCCTGGAGCCACCAAGAAGAAagggaaaaaaggaaagaaaagcaAGAAATGATTATTTGTGCCAGGTTCATCCTACATGTTGgctatttattatatatacacatatagggTGCTAGTTTCTATTTTTgactagattattttgcttatacccCATCGGCTGATTATCTTGctcgttttaaggaaaaactcggtTTAGTTTGAcgtatttctgaaaacaagacaatattaatttgcttgtctaaaaatgtttcttgatttgaaaaaaaaaaaaataataataataaagatcgTGCCAGGTTAACCTTATATGTTTGCT

Function

GO:

id name namespace
GO:0030097 hemopoiesis biological_process
GO:0044085 cellular component biogenesis biological_process
GO:0030099 myeloid cell differentiation biological_process
GO:0016072 rRNA metabolic process biological_process
GO:0002520 immune system development biological_process
GO:0002262 myeloid cell homeostasis biological_process
GO:0000027 ribosomal large subunit assembly biological_process
GO:0000028 ribosomal small subunit assembly biological_process
GO:0071826 ribonucleoprotein complex subunit organization biological_process
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0022618 ribonucleoprotein complex assembly biological_process
GO:0065003 protein-containing complex assembly biological_process
GO:0008152 metabolic process biological_process
GO:0034470 ncRNA processing biological_process
GO:0043009 chordate embryonic development biological_process
GO:0006364 rRNA processing biological_process
GO:0019538 protein metabolic process biological_process
GO:0043603 cellular amide metabolic process biological_process
GO:0043604 amide biosynthetic process biological_process
GO:1901564 organonitrogen compound metabolic process biological_process
GO:1901566 organonitrogen compound biosynthetic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:0048534 hematopoietic or lymphoid organ development biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0007275 multicellular organism development biological_process
GO:0006412 translation biological_process
GO:0043933 protein-containing complex subunit organization biological_process
GO:0030218 erythrocyte differentiation biological_process
GO:0048856 anatomical structure development biological_process
GO:0010467 gene expression biological_process
GO:0044237 cellular metabolic process biological_process
GO:0044238 primary metabolic process biological_process
GO:0048872 homeostasis of number of cells biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0042254 ribosome biogenesis biological_process
GO:0042255 ribosome assembly biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0044267 cellular protein metabolic process biological_process
GO:0000470 maturation of LSU-rRNA biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0042273 ribosomal large subunit biogenesis biological_process
GO:0042274 ribosomal small subunit biogenesis biological_process
GO:0071704 organic substance metabolic process biological_process
GO:0070925 organelle assembly biological_process
GO:0006518 peptide metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0034622 cellular protein-containing complex assembly biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:0034101 erythrocyte homeostasis biological_process
GO:0002181 cytoplasmic translation biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0009790 embryo development biological_process
GO:0009792 embryo development ending in birth or egg hatching biological_process
GO:0044391 ribosomal subunit cellular_component
GO:0044422 obsolete organelle part cellular_component
GO:0044424 obsolete intracellular part cellular_component
GO:1990904 ribonucleoprotein complex cellular_component
GO:0022625 cytosolic large ribosomal subunit cellular_component
GO:0022626 cytosolic ribosome cellular_component
GO:0022627 cytosolic small ribosomal subunit cellular_component
GO:0044444 obsolete cytoplasmic part cellular_component
GO:0044445 obsolete cytosolic part cellular_component
GO:0044446 obsolete intracellular organelle part cellular_component
GO:0044464 obsolete cell part cellular_component
GO:0005829 cytosol cellular_component
GO:0005840 ribosome cellular_component
GO:0032991 protein-containing complex cellular_component
GO:0015934 large ribosomal subunit cellular_component
GO:0015935 small ribosomal subunit cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0005623 obsolete cell cellular_component
GO:0043226 organelle cellular_component
GO:0043228 non-membrane-bounded organelle cellular_component
GO:0043229 intracellular organelle cellular_component
GO:0043232 intracellular non-membrane-bounded organelle cellular_component
GO:0005737 cytoplasm cellular_component
GO:0019843 rRNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0005198 structural molecule activity molecular_function
GO:0003723 RNA binding molecular_function
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
ko00230 Purine metabolism
ko00240 Pyrimidine metabolism
ko03020 RNA polymerase
ko03230 Viral genome structure
ko05164 Influenza A
ko05169 Epstein-Barr virus infection
ko05016 Huntington disease
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00053286 False 1606 lncRNA 0.36 3 4231636 4233420
TCONS_00057554 True 677 lncRNA 0.40 3 4232493 4233333

Neighbor

gene id symbol gene type direction distance location
XLOC_027023 NA coding upstream 8103 4222434 ~ 4223533 (+)
XLOC_027022 NA coding upstream 24719 4170505 ~ 4206917 (+)
XLOC_027021 NA coding upstream 63849 4166322 ~ 4167787 (+)
XLOC_027020 NA coding upstream 71415 4132090 ~ 4160221 (+)
XLOC_027019 waslb coding upstream 119869 4079418 ~ 4111767 (+)
XLOC_027025 ano2b coding downstream 34031 4267451 ~ 4358940 (+)
XLOC_027026 CU468826.2 coding downstream 143078 4376498 ~ 4387008 (+)
XLOC_027027 NA coding downstream 156489 4389909 ~ 4398440 (+)
XLOC_027028 NA coding downstream 249337 4482757 ~ 4485988 (+)
XLOC_027029 gnsa coding downstream 276576 4509996 ~ 4524284 (+)
XLOC_027018 NA non-coding upstream 160235 4065318 ~ 4071401 (+)
XLOC_027030 FP236161.1 non-coding downstream 351681 4585101 ~ 4585884 (+)
XLOC_027031 CABZ01020834.1 non-coding downstream 457306 4690726 ~ 4690841 (+)

Expression


Co-expression Network