G787440 (LOC106577546)


Basic Information

Item Value
gene id G787440
gene name LOC106577546
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 25677949 ~ 25678801 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU896816
GTGTCCTCAAGAATTAGGCAGTTGAATCTATTTGATGCAATCTAACTAACGTGATAAAGATAcccccatcaaaatccgtcagtttaaACTATAGATATCTGGGGTGGAACGCGGCAGAGCAACAGCCCTGATTTTCAGACCAATCGGTGGTGTTCTACGCGCAACGTTTACGGTGAATAGGCGGGGCCCTACGCGCAGCGCGTACTCTGTGTATAGGCAGAGGCGGCACTGACTACAACCCCAAAATCGCGGACACTGTGTGCCTTTGTGCAAAGATAGAGTCGTAGACATCCCACTTTGGTTTCCTCATAAAGTTCTTCCACAGTGCTTGAATTGTTTACTTGAGAGTACCTCCATCTGATTTCTCGATGATAGTCCTCCAGTTGTGTGTTTTTCTTTGAAAGTCCATTTGGGAAAAACATTTCCTCTGCCATTACTTTGATTTCCTCAACAGATTTCTTCTTGTCAACATAGAGGTGTCTTGTACCGCCACCGTTTACTGTCCTGACTTGCTTGAACTCTTTCCCCTTTTCATTGAAGTCCATCCAGCCTAGTTCAATTATTCTCTGTTTCTTCTTGGCATTAGTATTCCCCAACAATCCAGTTTTTAATCGTGTGGTTTGTTTATCCCTAACAGACCCTAATCTGCCTTTCAAGCTCTCTGTCATGGCATCCATGTAATTGGCTTGGCTGCAAAGTGTGGATAGCCCGTCTCCATACTCTGACAAATCACTGTCCGCCATGAATGGGATGACTGAAGTATCAAT
>TU896814
CCAGTTTTAATACAATGAGTAAACATTTCCACGCTAAATTATTGTATATACATTATGATCTAATGAATCAAAAATATATGGTAATTGTGTCCTCAAGAATTAGGCAGTTGAATCTATTTGATGCAATCTAACTAACGTGATAAAGATAcccccatcaaaatccgtcagtttaaACTATAGATATCTGGGGTGGAACGCGGCAGAGCAACAGCCCTGATTTTCAGACCAATCGGTGGTGTTCTACGCGCAACGTTTACGGTGAATAGGCGGGGCCCTACGCGCAGCGCGTACTCTGTGTATAGGCAGAGGCGGCACTGACTACAACCCCAAAATCGCGGACACTGTGTGCCTTTGTGCAAAGATAGAGTCGTAGACATCCCACTTTGGTTTCCTCATAAAGTTCTTCCACAGTGCTTGAATTGTTTACTTGAGAGTACCTCCATCTGATTTCTCGATGATAGTCCTCCAGTTGTGTGTTTTTCTTTGAAAGTCCATTTGGGAAAAACATTTCCTCTGCCATTACTTTGATTTCCTCAACAGATTTCTTCTTGTCAACATAGAGGTGTCTTGTACCGCCACCGTTTACTGTCCTGACTTGCTTGAACTCTTTCCCCTTTTCATTGAAGTCCATCCAGCCTAGTTCAATTATTCTCTGTTTCTTCTTGGCATTAGTATTCCCCAACAATCCAGTTTTTAATCGTGTGGTTTGTTTATCCCTAACAGACCCTAATCTGCCTTTCAAGCTCTCTGTCATGGCATCCATGTAATTGGCTTGGCTGCAAAGTGTGGATAGCCCGTCTCCATACTCTGACAAATCACTGTCCGCCATGA
>TU896815
GTGTCCTCAAGAATTAGGCAGTTGAATCTATTTGATGCAATCTAACTAACGTGATAAAGATAcccccatcaaaatccgtcagtttaaACTATAGATATCTGGGGTGGAACGCGGCAGAGCAACAGCCCTGATTTTCAGACCAATCGGTGGTGTTCTACGCGCAACGTTTACGGTGAATAGGCGGGGCCCTACGCGCAGCGCGTACTCTGTGTATAGGCAGAGGCGGCACTGACTACAACCCCAAAATCGCGGACACTGTGTGCCTTTGTGCAAAGATAGAGTCGTAGACATCCCACTTTGGTTTCCTCATAAAGTTCTTCCACAGTGCTTGAATTGTTTACTTGAGAGTACCTCCATCTGATTTCTCGATGATAGTCCTCCAGTTGTGTGTTTTTCTTTGAAAGTCCATTTGGGAAAAACATTTCCTCTGCCATTACTTTGATTTCCTCAACAGATTTCTTCTTGTCAACATAGAGGTGTCTTGTACCGCCACCGTTTACTGTCCTGACTTGCTTGAACTCTTTCCCCTTTTCATTGAAGTCCATCCAGCCTAGTTCAATTATTCTCTGTTTCTTCTTGGCATTAGTATTCCCCAACAATCCAGTTTTTAATCGTGTGGTTTGTTTATCCCTAACAGACCCTAATCTGCCTTTCAAGCTCTCTGTCATGGCATCCATGTAATTGGCTTGGCTGCAAAGTGTGGATAGCCCGTCTCCATACTCTGACAAATCACTGTCCGCCATGA

Function

NR:

description
uncharacterized protein LOC109906575 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU896816 False 767 lncRNA 0.44 1 25677949 25678715
TU896814 False 831 lncRNA 0.42 1 25677971 25678801
TU896815 True 745 lncRNA 0.45 1 25677971 25678715

Neighbor

gene id symbol gene type direction distance location
polr2a LOC106577550 coding downstream 74651 25586530 ~ 25603298 (-)
LOC110531827 LOC106577552 coding downstream 95701 25570616 ~ 25582248 (-)
LOC110531826 LOC106577553 coding downstream 113058 25554016 ~ 25564891 (-)
LOC110531822 LOC100136445 coding downstream 193728 25451118 ~ 25484221 (-)
LOC110531820 LOC106608670 coding downstream 233698 25433815 ~ 25444251 (-)
LOC110531833 LOC105020693 coding upstream 34170 25712971 ~ 25742721 (-)
LOC110531837 cssa07h11orf68 coding upstream 105132 25783933 ~ 25785181 (-)
LOC110531840 LOC106577539 coding upstream 187189 25865990 ~ 26900452 (-)
trnaa-ugc-32 NA coding upstream 614028 26292829 ~ 26292904 (-)
LOC110531842 rasgrp2 coding upstream 1438154 27116955 ~ 27196041 (-)
G787433 NA non-coding downstream 14987 25662746 ~ 25662962 (-)
G787432 NA non-coding downstream 15870 25660739 ~ 25662079 (-)
G787427 NA non-coding downstream 29344 25648233 ~ 25648605 (-)
G787424 NA non-coding downstream 33356 25644310 ~ 25644593 (-)
G787313 NA non-coding downstream 36832 25635629 ~ 25641117 (-)
G787464 NA non-coding upstream 44213 25723014 ~ 25723285 (-)
G787480 NA non-coding upstream 72073 25750874 ~ 25751511 (-)
G787317 NA non-coding upstream 79786 25758587 ~ 25762162 (-)
G787488 NA non-coding upstream 94029 25772830 ~ 25773044 (-)
G787496 NA non-coding upstream 104885 25783686 ~ 25783888 (-)
G787386 NA other downstream 154437 25522038 ~ 25619623 (-)
LOC110531812 LOC106577560 other downstream 320133 25338581 ~ 25365749 (-)
trmt44 trmt44 other downstream 374258 25294038 ~ 25309252 (-)
G787211 NA other downstream 386478 25290915 ~ 25291471 (-)
G785578 NA other downstream 712675 24963072 ~ 24965274 (-)
G787350 NA other upstream 196634 25875435 ~ 25894404 (-)
G787331 NA other upstream 203935 25882736 ~ 25930052 (-)
G787346 NA other upstream 246563 25925364 ~ 25955174 (-)
G788162 NA other upstream 1243111 26921912 ~ 26922402 (-)

Expression


Co-expression Network