G785962 (LOC105020693)


Basic Information

Item Value
gene id G785962
gene name LOC105020693
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 25712997 ~ 25742909 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU895142
ttttttattgaaaaccCAGCAGTCGTCATTAACACCTGTTCTTACTGGATAGGAATGAAATGCTCAACTGGAGCTAGTAGCCGGTCATTCTGCCATAAGCCCGAAAACAATTAAGAAGAAAAAACACTTCTGCAAACAGAATGACTACTTCAAAAAAACAAGTGTGGTTGGTTACACAGTTGCTAAAAAAAGCCTTTGGCAGGAGAGCGGTGCGTGACAAAAGTTCAGAGGGGGAATTAAAATGGGTTTGGGTTTTATCTACTTTCTCTGACAAGTGTTTCTCTCGTGGAAAGCGGATGAGGGACCGTCGCTCATCCACGACGTCCGCTCATCTCCTTCCTCGCTCTCGCTCCCACGTTCACCGTTTCTTTGGCGGGACGGCTGTGCGGGGCGGGGTGACGGGTCGGCCGGAGGTCATCCCTCCGTACTGATACTTGGCCTTCTTCTCAGACGGCTTCAGGATCTGGAAGGAGCACATCAGGGTCTCGTCAACGCTCATCATGCCGCCGGCGTTGTCAAACTCTCCACAGTAGTTAGGAGCTGAGAACAGAGTCACCAGCTGCCGCTTGGCAAAGAACTCATATCCATCCTCCACCACCTGGTGGGCTCTGCAGATGAGGTCCAGATCGTGACGGTTGAGGAACTTGCTGACCACATCAGCCCCAAATGTGAACGAGACCCCGCGGTCGTTCTCCCCCCAACCCTGAACGTCTTTGTCTGGGTCCGACCACAGCAGGTCACACAGCaaccCCGTGTCAGGAACGTCTGTGGGTCTCATGATGCGACGGATCTGCTCCATAGACTGCAAGTCTGGAGAGAGGCCTCCATGGCAACAGAAGATCTTCTCATCCACGATGGCAGCGATGGGAAGGCAGTTGAAGCAGTCAGTAAATGTCTTCCACAGCTTTATGTTGAATCTGCGCTTACACTCGTCGTAGAAGCCGTAGATGCGGTTGATGGAGGCACACTCGTGGTTGCCCCTGAGGAGGAAGAAGTTCTCTGGGTATTTGATCTTGTAGGCCAGCAGTAGACAGATGGTCTCCAGGGACTGCTTCCCTCGGTCCACGTAGTCTCCCAGGAACAGGTAGTTGGCCTCGGGCGGGAAGCCCCCGTACTCGAAGAGCCGCAGCAGGTCTGTGTACTGGCCGTGGATGTCACCACAGATCTTGAGGGGAGCCTCCAGTTCCAGGAGGATGGGCTGGCTGAGGAAGATCTCTCTGGACTTGATGCAGAGGCCCCTCACCTCAGCCTCTGACATCTGCACGATCTTCCCAGGGCGACATCCCCGCACCTCTAATAGCCGGGCGATCAGCGAGTCGACGTCCAACTCCCCCTCCGCCATTTCTACAGTGGGTGCTGCTGACAGACAGGGCTCTCTCCACTGCTAACTGCTGCCACAGACCCTGGCAGGCACCGCCTGAACACCGGAGCCGACTCACAGCCGCGGAATGCATGCTCCCGGGTCTCTCCGCCCGAATTTTTATTCGCACTGGGAGGGAATCAAATGCATGGTATAAGCTTATGTAATAGAACAGGTTCATTATAATAACACCGTTCCAATATGAACATGTAGGCTAATCATAATAGCTAGTCTAGTGTATGTTTTATAGATCAATAACAATGCAGTCA

Function

NR:

description
serine/threonine-protein phosphatase PP1-beta catalytic subunit-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU895142 True 1629 TUCP 0.53 8 25712997 25742909

Neighbor

gene id symbol gene type direction distance location
LOC110531831 LOC106577545 coding upstream 37 25680279 ~ 25712960 (+)
LOC110531832 LOC106577546 coding upstream 34179 25664478 ~ 25678818 (+)
LOC110531830 LOC106577548 coding upstream 50848 25653263 ~ 25662373 (+)
shbg LOC100135850 coding upstream 71929 25635682 ~ 25641068 (+)
zbtb4 LOC106577551 coding upstream 83429 25603761 ~ 25629568 (+)
LOC110531834 LOC106577543 coding downstream 6993 25749902 ~ 25758055 (+)
LOC110531838 drap1 coding downstream 43187 25786096 ~ 25791195 (+)
LOC110531839 LOC106577540 coding downstream 49857 25792766 ~ 25832287 (+)
alpk1 alpk1 coding downstream 1453612 27196521 ~ 27213187 (+)
epdl1 LOC106577537 coding downstream 1471210 27214119 ~ 27220387 (+)
G786134 NA non-coding upstream 70948 25641812 ~ 25642049 (+)
G786133 NA non-coding upstream 92702 25620077 ~ 25620295 (+)
G786109 LOC106577552 non-coding upstream 135698 25574195 ~ 25577299 (+)
LOC118966182 NA non-coding upstream 165221 25547105 ~ 25547900 (+)
G786166 NA non-coding downstream 1391 25744300 ~ 25744526 (+)
G785958 NA non-coding downstream 16565 25759474 ~ 25762167 (+)
G786171 NA non-coding downstream 21359 25764268 ~ 25764485 (+)
G786172 NA non-coding downstream 21795 25764704 ~ 25764984 (+)
G786174 NA non-coding downstream 23734 25766643 ~ 25766843 (+)
G786091 NA other upstream 166030 25545231 ~ 25546967 (+)
LOC110531825 LOC106577732 other upstream 180720 25525371 ~ 25532692 (+)
LOC110531788 LOC106577570 other upstream 760901 24872772 ~ 24952098 (+)
G785138 NA other upstream 1130120 24582387 ~ 24582877 (+)
hacd4 hacd4 other upstream 1625671 24077880 ~ 24087340 (+)
G786218 NA other downstream 215175 25874527 ~ 25958867 (+)
G786496 LOC106577539 other downstream 670203 26413112 ~ 26413532 (+)
G787022 LOC106577527 other downstream 1636423 27379332 ~ 27379664 (+)
taf6l taf6l other downstream 1742885 27480038 ~ 27487523 (+)
rbpjb LOC106577485 other downstream 3597072 29248127 ~ 29342203 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G391775 NA non-coding CI01000213 null 599601 ~ 607940 (+)
bowfin (Amia calva) AMCG00015505 LOC103385808,LOC107690779,LOC103366237,LOC103033313,LOC102208922 coding CM030132.1 CM030132.1 10484942 ~ 10489317 (+)