G787317


Basic Information

Item Value
gene id G787317
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 25758587 ~ 25762162 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU896688
tgtccaaacttttgactggtactttatacttgtacaaaatatgacatttttCATTAAAGCAGCACTGAATAAGTACAAGGTTATGGTTTAAACGTGCTAATTGACCTTGTAAAATAAACAGCCACTGATGTTCATATACCATACAGCAAAATGTAATAATGAAAACTGCACTGAGAATAAGCATAATTGACATAGTGATGGACAGAAATATATTGAGATACTGACTCAAAACTATTAACATGATATGgaaagagttttttttttaactgataTATTAATAATGCATCTAATACATtctaacatattgtacatttataAACAGCAATATCCTTCCTGTTCCAAAGATGTATTGAACATTTTAACCTAAAATGACAAGTTATACTTGCAGATGTTGACATGGTAAAGCTGTACATAACGTTAAGATATCCCGTCATCAAGGTGAGTACTATAGGTCACGTAcacagagtatacaaaacattaagaacactggctctttccatgacataagacaaatcaggtgaaagctatgatcccatattgatgccacctgttaaatccacttcaaaatcagtgtagatgaagggtaggagacagggtaaagaaggatgtttaagccttgagacatggattgtgtatgtgtgccattcggagggtgaatgggcaagacaaaatgtaAGCGCCTTTGAATGTGGTATGGTGCCAGGCACACCGTTTTTTTGTTGTCAAGAAATGCCATGCTGCaggtttttccacgctcaacactttccagtgtgtatcaagaatggtccaccacccaaaggacatccagccaacttgacacgactgtgggaagcattggaatcaacatgggccagcatccctgtggaacgcttgacaccttgtggagtccatgccctgacgaattgaggctgtttccgagggtaaaagggggggggggggggggtgcaactcaatattaggaagatgttcctaatgttttgcataCTCCGTGTATATCATCACCTAAGGCTTATGTACATCGAAATTGCAATCTTGCTTTATGGTGATATTTCACTACTTTAGTAGACCCACTCAACTCTAagtggggaaaatgctaaacCCTCCCTACTCCCCGTAATAGAATAGTGGTCACATTTTGTGATCAATTGATTGGTTGGCAGGTTCAACTCCTGGTCTGTTGGCTCAGCAATTTTTCCTCACCTCGAATATTTAGCCAATACCCAcagggcacaaactggttgaatcaacatttcaaccacaggattatgtcatcaaaTTTCAACATatacaaaccttgtataaaatgtTGAAGTTAAAACAAATGTCAGATCTTTAAAATATAAGTAAAAACAacaggctgggcagcacctcctacaaGAGAATTGATCCATCAACGCTACCCTTTGGTCTCCCagccagggttttaaccaagcccagccctgATTAGCTATGTTTGAcactgactattaccaatgtgctgttcgtgagaatgattgttgagagaTCTCTGCTTTaaaactaaatagattcactgttgctatacATCATTCCAAAgagtaggtttaacagagcaaattaaaATGTGACCCTACTTTATCACTTTTATCATCAATGATGCTATTTAGGCCTGTATAGCATctgcaaagtcatcaacagccATGTTTGGAATTCAACACATAATTCAACAGAAAATAGACCATACAAAAGGCCTAGGCTTTCAAGCTCTGGtttgatttcaaatgtaatgatatttagAGGACGAATAGGACAAAATCAAATTAAACttttaatgtttgatttgatttcgtCCTATTCTCTAACTGAATGATTGAAGTGGAGTAATTTAGAAACCCTGAAGCTCGTTTGGGACCAGAAGGAAATACCACTGCCTTTGGAGATAAGAAACAAGCCAGGGCTTATAAACAACCCAGTGGGGGGTGTATCTTTAGGGGTGACAAAAAGGGACGATTCAGCTCATCCTCGGGCGTTGCAATTGCCCACATACTGGCAGATACAAAAATGGGCTACTTCCCTGTAGCTCTCCCTTCTATTCCCTCTGTTAATTGTGTACAGGCAGGGTTCTGCAGCTGTCCTAATAAGCATGTCCACAATCCACATAgggaagagagcagagagcaccACTTTTGGACTCTTCTATTTGCCAGCCTTCAAATGACTATCCTTTGAAGCCCTTTAGAATAGCACAAAGGTAGAAAGGGAAGTTGGGTTGGAAGGGAGCTGGGCCAGTTGCATAAATCTTAAGTGTTTCCCGTAAGGGTTTACCTTATGGACTAGTTTCCCCTTACCTAAGGGAATTGTTTAAGGGCGTTGCATAGAGCCCCTCAAATATTTCCTTAGGTAAGGGCATAGGGTTTTTTTGGGTAGTTTGAAGGCACGTATGGCAGAAGGAATATCTGGTTACCATGGAGACGGCCTGTCTCACTGACTGAACATCTCCTCAAAGAGATCACTTTCATTTTGTGAGATGGCAAAATAGAACTTCGACAATCAAGACAGGATAACCAAATTGCTTCAGATAATAAACCACTTCCTTGTAGTTACTTTTTTCTCAACTCGTTTATATTATTTTCTCGTGCGTCAAGCTAGCTTACAGagtacagtgggacaaaaaagtatttagtcagccaccaattgtgcaagttctcccacttaaaaagatgagaggcctgtaaggtacacttcaactatgacagacaaaatgagaaaaaaaatccaggaaatcacattgtaggatttttaatgaatttatttgcaaattatggtggaaaataagtatttggtcacctacaaacaagcaatatttctggctctcacagacctgtaacttcttctttaagaggctcctctgtcctccactcgttacctgtattaatggcacctgtttgaacttgttttcagtataaaagacacctgtccacaacctcaaacagtcacactccaaactccactatggccaagaccaaagagatgtcaaaggacaccagaaacaaaattgtagacctgcaccaggctgggaagactgaatctgcaataggtaagcagcttggtttgaagaaatcaactgtgggagcaattattaggaaatggaagacatacaagaccactgataatctccctcgatctggggctccatgcaagatctcaccccacggggtcaaaatgatcacaagaacggtgagcaaaaatcccagaaccacacagagggacctagtgaatgaccagtagagagctgggaccaaagtaacaaagcctaccatcagtaacaccctacgccgccagggactcaaatcctgcagtgccagacgtgtccccctgcttaagccagtacatgtccaggcccgtctgaagtttgctagagagcatttggatgatccagaagaagattgggagaatgtcatatggtcagatgaaacccaaatataactttttggtaaaaactcaactcgtcgtgtttggaggacaaagaatgctgagttgcacccaaagaacaccatacctactgtgaagcatgggggtggaaacatcatgctttggggctgtttttctgcaaaggga

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU896688 True 3576 lncRNA 0.41 1 25758587 25762162

Neighbor

gene id symbol gene type direction distance location
LOC110531833 LOC105020693 coding downstream 15866 25712971 ~ 25742721 (-)
polr2a LOC106577550 coding downstream 155289 25586530 ~ 25603298 (-)
LOC110531827 LOC106577552 coding downstream 176339 25570616 ~ 25582248 (-)
LOC110531826 LOC106577553 coding downstream 193696 25554016 ~ 25564891 (-)
LOC110531822 LOC100136445 coding downstream 274366 25451118 ~ 25484221 (-)
LOC110531837 cssa07h11orf68 coding upstream 21771 25783933 ~ 25785181 (-)
LOC110531840 LOC106577539 coding upstream 103828 25865990 ~ 26900452 (-)
trnaa-ugc-32 NA coding upstream 530667 26292829 ~ 26292904 (-)
LOC110531842 rasgrp2 coding upstream 1354793 27116955 ~ 27196041 (-)
cskmt LOC106577536 coding upstream 1458224 27220386 ~ 27221976 (-)
G787480 NA non-coding downstream 7076 25750874 ~ 25751511 (-)
G787464 NA non-coding downstream 35302 25723014 ~ 25723285 (-)
G787440 LOC106577546 non-coding downstream 79786 25677949 ~ 25678801 (-)
G787433 NA non-coding downstream 95625 25662746 ~ 25662962 (-)
G787432 NA non-coding downstream 96508 25660739 ~ 25662079 (-)
G787488 NA non-coding upstream 10668 25772830 ~ 25773044 (-)
G787496 NA non-coding upstream 21524 25783686 ~ 25783888 (-)
G787499 LOC106577540 non-coding upstream 30677 25792839 ~ 25794712 (-)
G787500 NA non-coding upstream 68558 25830720 ~ 25832281 (-)
G787538 NA non-coding upstream 93092 25855254 ~ 25855776 (-)
G787386 NA other downstream 235075 25522038 ~ 25619623 (-)
LOC110531812 LOC106577560 other downstream 400771 25338581 ~ 25365749 (-)
trmt44 trmt44 other downstream 454896 25294038 ~ 25309252 (-)
G787211 NA other downstream 467116 25290915 ~ 25291471 (-)
G785578 NA other downstream 793313 24963072 ~ 24965274 (-)
G787350 NA other upstream 113273 25875435 ~ 25894404 (-)
G787331 NA other upstream 120574 25882736 ~ 25930052 (-)
G787346 NA other upstream 163202 25925364 ~ 25955174 (-)
G788162 NA other upstream 1159750 26921912 ~ 26922402 (-)

Expression


Co-expression Network