G785958


Basic Information

Item Value
gene id G785958
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 25759474 ~ 25762167 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU895138
aggcctctcatctttttaagtgggagaacttgcacaattggtggctgactaaatacttttttgtcccactgtactCTGTAAGCTAGCTTGACGCACGAGAAAATAATATAAACGAGTTGAGAAAAAAGTAACTACAAGGAAGTGGTTTATTATCTGAAGCAATTTGGTTATCCTGTCTTGATTGTCGAAGTTCTATTTTGCCATCTCACAAAATGAAAGTGATCTCTTTGAGGAGATGTTCAGTCAGTGAGACAGGCCGTCTCCATGGTAACCAGATATTCCTTCTGCCATACGTGCCTTCAAACTACCCAAAAAAACCCTATGCCCTTACCTAAGGAAATATTTGAGGGGCTCTATGCAACGCCCTTAAACAATTCCCTTAGGTAAGGGGAAACTAGTCCATAAGGTAAACCCTTACGGGAAACACTTAAGATTTATGCAACTGGCCCAGCTCCCTTCCAACCCAACTTCCCTTTCTACCTTTGTGCTATTCTAAAGGGCTTCAAAGGATAGTCATTTGAAGGCTGGCAAATAGAAGAGTCCAAAAGTggtgctctctgctctcttcccTATGTGGATTGTGGACATGCTTATTAGGACAGCTGCAGAACCCTGCCTGTACACAATTAACAGAGGGAATAGAAGGGAGAGCTACAGGGAAGTAGCCCATTTTTGTATCTGCCAGTATGTGGGCAATTGCAACGCCCGAGGATGAGCTGAATCGTCCCTTTTTGTCACCCCTAAAGATACACCCCCCACTGGGTTGTTTATAAGCCCTGGCTTGTTTCTTATCTCCAAAGGCAGTGGTATTTCCTTCTGGTCCCAAACGAGCTTCAGGGTTTCTAAATTACTCCACTTCAATCATTCAGTTAGAGAATAGGacgaaatcaaatcaaacattaaaaGTTTAATTTGATTTTGTCCTATTCGTCCTctaaatatcattacatttgaaatcaaaCCAGAGCTTGAAAGCCTAGGCCTTTTGTATGGTCTATTTTCTGTTGAATTATGTGTTGAATTCCAAACATggctgttgatgactttgcagATGCTATACAGGCCTAAATAGCATCATTGATGATAAAAGTGATAAAGTAGGGTCACATtttaatttgctctgttaaacctactcTTTGGAATGATgtatagcaacagtgaatctatttagttttAAAGCAGAGAtctctcaacaatcattctcacgaacagcacattggtaatagtcagtgTCAAACATAGCTAATcagggctgggcttggttaaaaccctggctGGGAGACCAAAGGGTAGCGTTGATGGATCAATTCTCttgtaggaggtgctgcccagcctgtTGTTTTTACTTATATTTTAAAGATCTGACATTTGTTTTAACTTCAacattttatacaaggtttgtatATGTTGAAAtttgatgacataatcctgtggttgaaatgttgattcaaccagtttgtgccctgTGGGTATTGGCTAAATATTCGAGGTGAGGAAAAATTGCTGAGCCAACAGACCAGGAGTTGAACCTGCCAACCAATCAATTGATCACAAAATGTGACCACTATTCTATTACGGGGAGTAGGGAGGgtttagcattttccccactTAGAGTTGAGTGGGTCTACTAAAGTAGTGAAATATCACCATAAAGCAAGATTGCAATTTCGATGTACATAAGCCTTAGGTGATGATATACACGGAGtatgcaaaacattaggaacatcttcctaatattgagttgcacccccccccccccccccttttaccctcggaaacagcctcaattcgtcagggcatggactccacaaggtgtcaagcgttccacagggatgctggcccatgttgattccaatgcttcccacagtcgtgtcaagttggctggatgtcctttgggtggtggaccattcttgatacacactggaaagtgttgagcgtggaaaaacctGCAGCATGGCATTTCTTGACAACAAAAAAACGGTGTGCCTGGCACCATACCACATTCAAAGGCGCTtacattttgtcttgcccattcaccctccgaatggcacacatacacaatccatgtctcaaggcttaaacatccttctttaccctgtctcctacccttcatctacactgattttgaagtggatttaacaggtggcatcaatatgggatcatagctttcacctgatttgtcttatgtcatggaaagagccagtgttcttaatgttttgtatactctgtgTACGTGACCTATAGTACTCACCTTGATGACGGGATATCTTAACGTTATGTACAGCTTTACCATGTCAACATCTGCAAGTATAACTTGTCATTTTAGGTTAAAATGTTCAATACATCTTTGGAACAGGAAGGATATTGCTGTTtataaatgtacaatatgttagaATGTATTAGATGCATTATTAATAtatcagttaaaaaaaaaactctttcCATATCATGTTAATAGTTTTGAGTCAGTATCTCAATATATTTCTGTCCATCACTATGTCAATTATGCTTATTCTCAGTGCAGTTTTCATTATTACATTTTGCTGTATGGTATATGAACATCAGTGGCTGTTTATTTTACAAGGTCAATTAGCACGTTTAAACCATAACCTTGTACTTATTCAGTGCTGCTTTAATGaaaaatgtcatattttgtacaagtataaagtaccagtcaaaagtttggacacaatt

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU895138 True 2694 lncRNA 0.40 1 25759474 25762167

Neighbor

gene id symbol gene type direction distance location
LOC110531834 LOC106577543 coding upstream 1419 25749902 ~ 25758055 (+)
LOC110531831 LOC106577545 coding upstream 46514 25680279 ~ 25712960 (+)
LOC110531832 LOC106577546 coding upstream 80656 25664478 ~ 25678818 (+)
LOC110531830 LOC106577548 coding upstream 97325 25653263 ~ 25662373 (+)
shbg LOC100135850 coding upstream 118406 25635682 ~ 25641068 (+)
LOC110531838 drap1 coding downstream 23929 25786096 ~ 25791195 (+)
LOC110531839 LOC106577540 coding downstream 30599 25792766 ~ 25832287 (+)
alpk1 alpk1 coding downstream 1434354 27196521 ~ 27213187 (+)
epdl1 LOC106577537 coding downstream 1451952 27214119 ~ 27220387 (+)
LOC110531847 NA coding downstream 1494436 27256603 ~ 27267492 (+)
G786166 NA non-coding upstream 14948 25744300 ~ 25744526 (+)
G786134 NA non-coding upstream 117425 25641812 ~ 25642049 (+)
G786133 NA non-coding upstream 139179 25620077 ~ 25620295 (+)
G786109 LOC106577552 non-coding upstream 182175 25574195 ~ 25577299 (+)
G786171 NA non-coding downstream 2101 25764268 ~ 25764485 (+)
G786172 NA non-coding downstream 2537 25764704 ~ 25764984 (+)
G786174 NA non-coding downstream 4476 25766643 ~ 25766843 (+)
G786183 NA non-coding downstream 12644 25774811 ~ 25775218 (+)
G786188 NA non-coding downstream 19573 25781740 ~ 25781949 (+)
G785962 LOC105020693 other upstream 16565 25712997 ~ 25742909 (+)
G786091 NA other upstream 212507 25545231 ~ 25546967 (+)
LOC110531825 LOC106577732 other upstream 227197 25525371 ~ 25532692 (+)
LOC110531788 LOC106577570 other upstream 807378 24872772 ~ 24952098 (+)
G785138 NA other upstream 1176597 24582387 ~ 24582877 (+)
G786218 NA other downstream 195917 25874527 ~ 25958867 (+)
G786496 LOC106577539 other downstream 650945 26413112 ~ 26413532 (+)
G787022 LOC106577527 other downstream 1617165 27379332 ~ 27379664 (+)
taf6l taf6l other downstream 1723627 27480038 ~ 27487523 (+)
rbpjb LOC106577485 other downstream 3577814 29248127 ~ 29342203 (+)

Expression


Co-expression Network