G787318


Basic Information

Item Value
gene id G787318
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 25886288 ~ 25947076 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU896689
gttagagagagatgagaaaacactgacagtaaaaatgtcagcgagagatgagaaaacactgactgtaaatatgttagagagagagatgagaaaacactgacagtaaatatgttagagagagataataaaacactgaaaataaaaatgttagagagagatgagaaaacactgacagtaaatatgttagagagagatgagaaaacactgacagtaaatatgttagagagatgagaaaacactgacagtatattgtagggagagatgagaaaacactgacagtaaatatattagagagagatgagaaaacactgacagtaaatatgttagagagagatggtaaaatactgactgtaaatatgttagagagagagatgagaaaacactgacagtaaatatgttagagagagatgagaaaacactgacagtaaatatgttagagagagatggtaaaatactgactgtaaatatgttagagagagagatgagaaaacactgacagtaaatatgttagagagagatgagaaaacactgacagtaaatatgttagagagagagatgataaaacactgacagtaaatatgttagagagagatgagaaaacactgacagtaaatatgttagagagatgagaaaacactgacagtaaatatgttagagagagatgagaaaacactgacagtaaatatgttggAGAGAGATGGTAAaatactgactgtaaatatgttagagagagagatgagaaaacactgacagtaaatatgttagagagagatgagaaaaaactgagagtaaatatgttagagatgagaacactgacagtaaatatgttagagagaaatgagaaaacactgacagttttTTGTAGGGAGATGAGAATTCTTTTAAATGAAATATGTTAGAGGGAAATTAGAAAAcgctgacagtaaatatgttagagagagagatgataaaacactgacagtaaatatgttagagagagatgagaaaagactgacagtaaatatgttagagagagatgagaaaacactgacagtaaatatgttagagagagatgagaaaacactgacagtaaatatgttggAGAGAGATGGTAAAATagtgactgtaaatatgttagagagagagatgagaaaacactgacagtaaatatgttagagagagatgagaaaaaactgagagtaaatatgttagagatgagaacactgacagtaaatatgttagagagaaatgagaaaacactgacagttttTTGTAGGGAGATGAGAATTCttttaaattaaatatgttagagagaaattagaaaacgctgacagtaaatatgttagagagagatgagaaaaaactgacagtatattgtaggcagagatgagaaaaaactgaaattaaatgagttagagagaaatgagaaaacactgacagtatattgtaggcagagatgagaaaaaactgaaattaaataagttagtgagaaatgagaaaacactgacagtaaatatgttagagagagagatgagaaaacactgacagaaaATTGTAGGGAGATGagaattttttttaattaaatattttagagagaaatgagaaaacgctgacagtaaatatgttagagagagatgagaaaacactgacagtaaatatgctagagagagatgagaaaacactgacagtaaatatgttagagagagagatgataaaacactgacagtaaatatgttagagagagatgataaaatactgactgtaaatatgttagagagagagatgagaaaacactgacagtaaaaatgttagagagagatgagaaaacactgacagtaaatatgttcgagagag

Function

NR:

description
melanoma-associated antigen C1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU896689 True 1833 lncRNA 0.32 2 25886288 25947076

Neighbor

gene id symbol gene type direction distance location
LOC110531837 cssa07h11orf68 coding downstream 101107 25783933 ~ 25785181 (-)
LOC110531833 LOC105020693 coding downstream 143567 25712971 ~ 25742721 (-)
polr2a LOC106577550 coding downstream 282990 25586530 ~ 25603298 (-)
LOC110531827 LOC106577552 coding downstream 304040 25570616 ~ 25582248 (-)
LOC110531826 LOC106577553 coding downstream 321397 25554016 ~ 25564891 (-)
trnaa-ugc-32 NA coding upstream 345753 26292829 ~ 26292904 (-)
LOC110531842 rasgrp2 coding upstream 1169879 27116955 ~ 27196041 (-)
cskmt LOC106577536 coding upstream 1273310 27220386 ~ 27221976 (-)
LOC110531843 LOC106608596 coding upstream 1274990 27222066 ~ 27234759 (-)
LOC110531846 LOC106577533 coding upstream 1300318 27247394 ~ 27271316 (-)
G787320 NA non-coding downstream 1165 25874324 ~ 25885123 (-)
G787345 NA non-coding downstream 7387 25876734 ~ 25878901 (-)
G787544 NA non-coding downstream 22391 25863496 ~ 25863897 (-)
G787543 NA non-coding downstream 26812 25859044 ~ 25859476 (-)
G787538 NA non-coding downstream 30512 25855254 ~ 25855776 (-)
LOC110531840 LOC106577539 non-coding upstream 270716 25865990 ~ 26900452 (-)
G787683 NA non-coding upstream 274088 26221164 ~ 26221681 (-)
G787690 NA non-coding upstream 280911 26227987 ~ 26228525 (-)
G787691 NA non-coding upstream 281695 26228771 ~ 26229027 (-)
G787708 NA non-coding upstream 312126 26259202 ~ 26259428 (-)
G787386 NA other downstream 362776 25522038 ~ 25619623 (-)
LOC110531812 LOC106577560 other downstream 528472 25338581 ~ 25365749 (-)
trmt44 trmt44 other downstream 582597 25294038 ~ 25309252 (-)
G787211 NA other downstream 594817 25290915 ~ 25291471 (-)
G785578 NA other downstream 921014 24963072 ~ 24965274 (-)
G788162 NA other upstream 974836 26921912 ~ 26922402 (-)
G788171 NA other upstream 985965 26933041 ~ 26933401 (-)
G788172 NA other upstream 988051 26935127 ~ 26935506 (-)
G788173 NA other upstream 989408 26936484 ~ 26936764 (-)

Expression


Co-expression Network