Gene
RNA
| Item | Value |
|---|---|
| gene id | G786222 |
| gene name | NA |
| gene type | non-coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048573.1 |
| NCBI id | CM023227.2 |
| chromosome length | 79455637 |
| location | 25906222 ~ 25927271 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| PREDICTED: collagen alpha-1(XVIII) chain isoform X6 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU895480 | True | 515 | lncRNA | 0.32 | 2 | 25906222 | 25927271 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110531839 | LOC106577540 | coding | upstream | 73935 | 25792766 ~ 25832287 (+) |
| LOC110531838 | drap1 | coding | upstream | 115027 | 25786096 ~ 25791195 (+) |
| LOC110531834 | LOC106577543 | coding | upstream | 148167 | 25749902 ~ 25758055 (+) |
| LOC110531831 | LOC106577545 | coding | upstream | 193262 | 25680279 ~ 25712960 (+) |
| LOC110531832 | LOC106577546 | coding | upstream | 227404 | 25664478 ~ 25678818 (+) |
| alpk1 | alpk1 | coding | downstream | 1269250 | 27196521 ~ 27213187 (+) |
| epdl1 | LOC106577537 | coding | downstream | 1286848 | 27214119 ~ 27220387 (+) |
| LOC110531847 | NA | coding | downstream | 1329332 | 27256603 ~ 27267492 (+) |
| LOC110531852 | rtn3 | coding | downstream | 1413427 | 27340698 ~ 27375922 (+) |
| LOC110531855 | LOC106577526 | coding | downstream | 1461620 | 27388891 ~ 27399023 (+) |
| G786205 | NA | non-coding | upstream | 68685 | 25837163 ~ 25837537 (+) |
| G786189 | NA | non-coding | upstream | 122908 | 25782222 ~ 25783314 (+) |
| G786188 | NA | non-coding | upstream | 124273 | 25781740 ~ 25781949 (+) |
| G786183 | NA | non-coding | upstream | 131004 | 25774811 ~ 25775218 (+) |
| G786219 | NA | non-coding | downstream | 1131 | 25928402 ~ 25934960 (+) |
| G786229 | NA | non-coding | downstream | 17761 | 25945032 ~ 25946326 (+) |
| G786270 | NA | non-coding | downstream | 102062 | 26029333 ~ 26104028 (+) |
| G786354 | NA | non-coding | downstream | 258874 | 26186145 ~ 26188032 (+) |
| G786366 | NA | non-coding | downstream | 290527 | 26217798 ~ 26218888 (+) |
| G785962 | LOC105020693 | other | upstream | 163313 | 25712997 ~ 25742909 (+) |
| G786091 | NA | other | upstream | 359255 | 25545231 ~ 25546967 (+) |
| LOC110531825 | LOC106577732 | other | upstream | 373945 | 25525371 ~ 25532692 (+) |
| LOC110531788 | LOC106577570 | other | upstream | 954126 | 24872772 ~ 24952098 (+) |
| G785138 | NA | other | upstream | 1323345 | 24582387 ~ 24582877 (+) |
| G786218 | NA | other | downstream | 30813 | 25874527 ~ 25958867 (+) |
| G786496 | LOC106577539 | other | downstream | 485841 | 26413112 ~ 26413532 (+) |
| G787022 | LOC106577527 | other | downstream | 1452061 | 27379332 ~ 27379664 (+) |
| taf6l | taf6l | other | downstream | 1558523 | 27480038 ~ 27487523 (+) |
| rbpjb | LOC106577485 | other | downstream | 3412710 | 29248127 ~ 29342203 (+) |
