G786220


Basic Information

Item Value
gene id G786220
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 25913952 ~ 25947017 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU895478
tcatctctctctaacatatttactgtcagtgttttctcatctctctctaacatattaactgtcagtgttttctcatctctctctaacatatttactgtcagtgttttctcatctctctctaacatattaactgtcagtgttttctcctctctctaacatatttactgtcagtgttttctcatctctccctacaatatactgtcagtgttttctcatctctctaacatatttactgtcagtgttttctcatctctctctaacatatttactgtcagtgttttctcatctctctctaacatttttattttcagtgttttattatctctctctaacatatttactgtcagtgttttctcatctctctctctaacatatttacagtca

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU895478 True 384 lncRNA 0.33 2 25913952 25947017

Neighbor

gene id symbol gene type direction distance location
LOC110531839 LOC106577540 coding upstream 81665 25792766 ~ 25832287 (+)
LOC110531838 drap1 coding upstream 122757 25786096 ~ 25791195 (+)
LOC110531834 LOC106577543 coding upstream 155897 25749902 ~ 25758055 (+)
LOC110531831 LOC106577545 coding upstream 200992 25680279 ~ 25712960 (+)
LOC110531832 LOC106577546 coding upstream 235134 25664478 ~ 25678818 (+)
alpk1 alpk1 coding downstream 1249504 27196521 ~ 27213187 (+)
epdl1 LOC106577537 coding downstream 1267102 27214119 ~ 27220387 (+)
LOC110531847 NA coding downstream 1309586 27256603 ~ 27267492 (+)
LOC110531852 rtn3 coding downstream 1393681 27340698 ~ 27375922 (+)
LOC110531855 LOC106577526 coding downstream 1441874 27388891 ~ 27399023 (+)
G786205 NA non-coding upstream 76415 25837163 ~ 25837537 (+)
G786189 NA non-coding upstream 130638 25782222 ~ 25783314 (+)
G786188 NA non-coding upstream 132003 25781740 ~ 25781949 (+)
G786183 NA non-coding upstream 138734 25774811 ~ 25775218 (+)
G786270 NA non-coding downstream 82316 26029333 ~ 26104028 (+)
G786354 NA non-coding downstream 239128 26186145 ~ 26188032 (+)
G786366 NA non-coding downstream 270781 26217798 ~ 26218888 (+)
G786367 NA non-coding downstream 277207 26224224 ~ 26224434 (+)
G786387 NA non-coding downstream 309028 26256045 ~ 26256438 (+)
G785962 LOC105020693 other upstream 171043 25712997 ~ 25742909 (+)
G786091 NA other upstream 366985 25545231 ~ 25546967 (+)
LOC110531825 LOC106577732 other upstream 381675 25525371 ~ 25532692 (+)
LOC110531788 LOC106577570 other upstream 961856 24872772 ~ 24952098 (+)
G785138 NA other upstream 1331075 24582387 ~ 24582877 (+)
G786218 NA other downstream 11067 25874527 ~ 25958867 (+)
G786496 LOC106577539 other downstream 466095 26413112 ~ 26413532 (+)
G787022 LOC106577527 other downstream 1432315 27379332 ~ 27379664 (+)
taf6l taf6l other downstream 1538777 27480038 ~ 27487523 (+)
rbpjb LOC106577485 other downstream 3392964 29248127 ~ 29342203 (+)

Expression


Co-expression Network