XLOC_002703


Basic Information

Item Value
gene id XLOC_002703
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 19518885 ~ 19521704 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00005758
GAATTCTGCTGAGTTGAAGGGATCCTCCTGTCAGACAACCTCTCCAAAGTACAATAGGACTAggttcccactacaaggattagatttggctactgcagtcccggtttgggccagactcacttgtgaagactaaagatgaagacaacatacaagaacaatttagaggatggcgacacactttttattccacctatatacccccttttatgtgtaagcaacattccacaagataaaacaaaactaaatgacaggttatttcttttcattttgtctgttttcttggaacattgtacacaatttacaaccagttttattatatatatatatataggtcagagcaagaaaatgttatgttttcttctggagaaagtcttatttcttttatttcggctagaataaaaacagttttgatttttaaaaaaaacattttaaggtcaatattattagcccctttaagcaattttttcagactgtctacagaacaaaccatcgatatacaataacttgcctaattaccctaacctgcctagttaagcctctaaatgtcactttaagctgtatagaagtgtcttgaagaatatctagtcaaatatcatttactcagttattagaaatgagttattaaaactattgtgattagaaatgtgttaaaaaatatttccgttaaacaaaaattaagggattatatatatatatatatgtatgtatatgtatatataatcccttaatttctgtttaacggaaatatttttatatacattgtatatataaatatatatatatataatgacaaaatctgttttgtgtcatgcattagagtttgcttaaaaaaactggttatctctgagaaagtattgttattttatattattgatgtgttattagttcagaggagattgcaatttgttgaatgccatttataaaaattttttttttaaattgactacagactttaataagattttatcagacaattattttaatttgtatcattttatttactactgtaaatattgtttgcttggtatttattttgtgtttgtgtactcttttattattgtaactccctgaagaaagtcttttggatactgaacacatgactggtattatcttgtattttaaaattatagtcttggaaacatgcattttctttaacactatttaagaaattataagcaatataacatgtgcttacacaagttatttgtgtttttactatagtaaactatagtcacccttagtgtacatgttttgaagtacttgtaAATATTCCTATGGTCCTAATATAAATGCTGCAATGGACTTTGTATTTAAATCTTTATTGCACAGTATTTCAGCCATGGTTATAGTAcaacttgttggttttgttttaaacgtagtaaaacatggttatgtgtgataaaagtatgttaatctatttgtatgtttgtgaaaaatattaataaatcttcaactgtta

Function

GO:

id name namespace
GO:0044085 cellular component biogenesis biological_process
GO:0022607 cellular component assembly biological_process
GO:0001732 formation of cytoplasmic translation initiation complex biological_process
GO:0071826 ribonucleoprotein complex subunit organization biological_process
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0022618 ribonucleoprotein complex assembly biological_process
GO:0065003 protein-containing complex assembly biological_process
GO:0043603 cellular amide metabolic process biological_process
GO:0043604 amide biosynthetic process biological_process
GO:1901566 organonitrogen compound biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:0006412 translation biological_process
GO:0006413 translational initiation biological_process
GO:0043933 protein-containing complex subunit organization biological_process
GO:0010467 gene expression biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0006518 peptide metabolic process biological_process
GO:0034622 cellular protein-containing complex assembly biological_process
GO:0021983 pituitary gland development biological_process
GO:0002181 cytoplasmic translation biological_process
GO:0002183 cytoplasmic translational initiation biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0009790 embryo development biological_process
GO:0044424 obsolete intracellular part cellular_component
GO:1990904 ribonucleoprotein complex cellular_component
GO:0005832 chaperonin-containing T-complex cellular_component
GO:0005852 eukaryotic translation initiation factor 3 complex cellular_component
GO:0101031 chaperone complex cellular_component
GO:1905368 peptidase complex cellular_component
GO:1905369 endopeptidase complex cellular_component
GO:0032991 protein-containing complex cellular_component
GO:0033290 eukaryotic 48S preinitiation complex cellular_component
GO:0000502 proteasome complex cellular_component
GO:0016282 eukaryotic 43S preinitiation complex cellular_component
GO:0070993 translation preinitiation complex cellular_component
GO:0008135 translation factor activity, RNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:1901363 heterocyclic compound binding molecular_function
GO:0003723 RNA binding molecular_function
GO:0031369 translation initiation factor binding molecular_function
GO:0003743 translation initiation factor activity molecular_function
GO:0051082 unfolded protein binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00005758 True 1459 lncRNA 0.28 2 19518885 19521704

Neighbor

gene id symbol gene type direction distance location
XLOC_002701 NA coding downstream 426279 19088996 ~ 19092606 (-)
XLOC_002700 adra1ab coding downstream 506951 18999841 ~ 19011934 (-)
XLOC_002699 LRRTM4 coding downstream 1026268 18291971 ~ 18492617 (-)
XLOC_002698 NA coding downstream 1231942 18284414 ~ 18286943 (-)
XLOC_002697 NA coding downstream 1235929 18274014 ~ 18282956 (-)
XLOC_002704 gfra2b coding upstream 201321 19723025 ~ 19801821 (-)
XLOC_002705 NA coding upstream 409594 19931298 ~ 19996731 (-)
XLOC_002706 NA coding upstream 512196 20033900 ~ 20065149 (-)
XLOC_002707 pbdc1 coding upstream 581363 20103067 ~ 20106012 (-)
XLOC_002708 CR450836.1 coding upstream 622093 20143797 ~ 20151328 (-)
XLOC_002695 NA non-coding downstream 1607346 17900311 ~ 17911539 (-)
XLOC_002694 NA non-coding downstream 1773511 17731293 ~ 17745374 (-)
XLOC_002710 NA non-coding upstream 712310 20234014 ~ 20236971 (-)
XLOC_002714 NA non-coding upstream 926935 20448639 ~ 20456007 (-)
XLOC_002716 BX294119.1 non-coding upstream 962110 20483814 ~ 20483930 (-)

Expression


Co-expression Network