XLOC_027033 (slc13a4)


Basic Information

Item Value
gene id XLOC_027033
gene name slc13a4
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 4803698 ~ 4832149 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00053294
ACACTTTTCATAAAGGTGTCTAACAGAACACACAGTTCATGCATCAGCAGTTTCAGGTGTCAGCTCTTCTGTAAAAAGTAACTGTAAAGTATTGATCTTTTCTGTAAAAATAGGAAAGCATGGAAAATCAGAGATAGACGCAAAAAATAAGCAGCTTTTTTAACCATCAATACTTGCTGAAAGAGGTATAAGAGAGTCACATCACACCTGGATGGATTAGAAGGACGACAATCACATCGAAACCGGATCCAAAGACAAGACACCATTTACGCCTTTAATAAATAGCAAGAGCAACTTTAAGAAATCACGGAGAAAAGGGAGGCAGACACTCCAGCACGCGTATAAGGTGAAAgtgggagtgaagtgacgcatTTATTTAAAGAACCCAGAACATCTGAGAGCTGCACTGAGAAAATCTTTCTCCCATGAGGCTGGAAGGCGCCAGAATGGACTTAATCAAAAAACTATGGACGGCTCGGAAACTGATTCTCGTGGTGATGATTCCTTTATCCCTGCTGCCTCTGCCACTCATCCACCCGTGCAGTGAGTCCTCATGTGCTTACGTCCTGATCGTGACAGCAGTATATTGGGTTTCTGAAGCCGTTCCTCTAGGCGCCGCTGCTCTCGTCCCAGCCTTTCTTTACCCTCTGTTTGGGGTCCTCAAATCCAGTGAGgTGGCATCTGAATATTTTAAGGACACCACCCTGTTGCTGATGGGAGTCATCTGTTTGGCCGCCTCTATTGAGAAGTGGAACCTGCATAAGCGCATCGCCCTGCGGATGGTCATGATTGCTGGGGCCAAACCTGGCATGCTGGTGTTGGGCTTCATGTGCTGCACAGTTTTTCTCTCCATGTGGTTGAGCAACACTTCCACCACTGCAATGGTGATGCCGATCGCTGAAGCTGTGCTCCAGCAGCTCATCTGCACCGGCATCGCAGATTCGCAAGAAGATTCGCAGGACTTAACACAGGACGAGGAGAGCGACAAAGAGGAAAACCTGGAATCAAGCAAGAATCACCTGGAGCTGCTGGACTGTAAAAATGAAAAAAACGAAGTCTGTATGATGAACGAGGCTCCAATTAGCATTCCAGTGCCAAAGAAGCCCAAAATCCGCAGGGATTCTCTGTACCCCACCAAACGGGATCACATGATCTGCAAGTGTCTCACTCTGAGCATCACTTACGCCGCCACCATTGGCGGCCTCATCACCATCACCGGCACCTCCACCAATCTCATTTTCGCTGAACAGTTCAACAATCGTTACCCAGAAGCAAAAGTCATCAACTTCGGTACGTGGTTCATCTTCAGTCTGCCGATCGCTCTCATCATGCTGATTCTCACCTGGATCTGGCTGCACTTTTTATTCCTGGGATGCAATTTCAGAGAAACCTGCTCACTCAGCAAGAAACGCAAAACTAGAAGAGAAATCCTCTCCGAGAAGCGCATTCATGAGGAGTACCAGAAACTCGGCCCCATCagctatcCTGAAGTTGTGACAGGCAtctttttcattttgatgactgtTCTGTGGTTCACCAGAGAGCCAGGATTTGTCCCCGGATGGACGTCGCTTTTTGAGAAAAAGGGCTACAGAACTGATGCCACAGTGTCGGTGCTGCTGGGATTCCTCCTGTTCCTCATCCCCGCTCGAAAGCCATGGCCATCTGCATTCTCCAGCCAGAGCAAAGatgatgaggatgaggatgagGAACAGGATCCGCTGGCTCCAATGATCACCTGgaaggactttcagagactgatgcCCTGGGAGATCGTCATTCTGGTGGGTGGAGGATACGCACTGGCTGCCGGGTGCAAGGTGTCTGGTCTGTCCATGTGGATCGGCCGTCAGCTGGAACCGATGAGTGGTCTTCCTCCATGGGCCGTCACACTGCTGGCCTGTCTGCTGGTGTCTGCTGTCACTGAGTTCGCCAGCAACCCTGCCACACTCACTGTCTTCCTGCCCATCCTCTCAGCGCTGTCAGAGACGCTGCAGATGAACCCTCTGCACACACTCATTCCTGCCACCATGTGTGTGTCGTTCGGCGTCATGCTGCCTGTCGGAAACCCACCGAACGCCATCGTGTTCAGTTACGGCCACGTGCAGATCAGCGACATGGTGAAGGCCGGCTTTGGAGTCAATCTGATCGGTGTCTTCGTGGTGATGTTGGCTATTTTGACGTGGGGTGAACCGCTCTTCCACCTCAGCCAGTTTCCCACATGGGCGGCAATGCGAAACGTCACGGGCAGCTTGTAGCTGTGATTATGGATGGTGGACATTGGGTTTACACTGAaggaggcacacacacacacgtcattaATGCCTTATTTTTTTCTCCGTCCATGATGCTTTGCACCAGGAGGATGCAGAACGGTGGAAACTATTCTTACACTCCTATATCTAAGCATTAGGCGTAGATTTACAGCTGAACGCACAAGTGTACGTGCCTACAAAACACAATCAgtaatgcttgtgtgtgtgtatgtaacatATCTGGATGCTTTATTGCGGATGTCTAACAAACGTCGGCTAATTTACTTGAGAGGTTTGAGGGAGATTCTGCATCCGACAACGTCAGAAATCTGATAATAGTTTCTTACAAAAATGTTACATGTGGTTTGGTTACAGAAGATTGTTACAAAAGAAATTCTCAATCATTAATCGATTAAAGCAGTTTTTGAAGGTGGCCGTTGATCATTGTACATACAGGAAACTAACATTTTCTATTGTTGACCACCAACAACCCATTTCATctctaaaacacaataaaaacactgtatttttg
>TCONS_00053295
GGAAAACCTGGAATCAAGCAAGAATCACCTGGAGCTGCTGGACTGTAAAAATGAAAAAAACGAAGTCTGTATGATGAACGAGGAGTTGAACGGGCTATCATTAAAGCCTGGCTTCGGCCCAAACTTTTCTAGAGAATCAAATGGATATCTGCCTGAGGCTCCAATTAGCATTCCAGTGCCAAAGAAGCCCAAAATCCGCAGGGATTCTCTGTACCCCACCAAACGGGATCACATGATCTGCAAGTGTCTCACTCTGAGCATCACTTACGCCGCCACCATTGGCGGCCTCATCACCATCACCGGCACCTCCACCAATCTCATTTTCGCTGAACAGTTCAACAATCGTTACCCAGAAGCAAAAGTCATCAACTTCGGTACGTGGTTCATCTTCAGTCTGCCGATCGCTCTCATCATGCTGATTCTCACCTGGATCTGGCTGCACTTTTTATTCCTGGGATGCAATTTCAGAGAAACCTGCTCACTCAGCAAGAAACGCAAAACTAGAAGAGAAATCCTCTCCGAGAAGCGCATTCATGAGGAGTACCAGAAACTCGGCCCCATCagctatcCTGAAGTTGTGACAGGCAtctttttcatt

Function

symbol description
slc13a4 Predicted to enable transmembrane transporter activity. Predicted to be involved in anion transmembrane transport. Predicted to act upstream of or within sodium ion transport and transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human SLC13A4 (solute carrier family 13 member 4).

GO:

id name namespace
GO:0098656 anion transmembrane transport biological_process
GO:0055085 transmembrane transport biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0022857 transmembrane transporter activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070424-71 Predicted to enable transmembrane transporter activity. Predicted to be involved in anion transmembrane transport. Predicted to act upstream of or within sodium ion transport and transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human SLC13A4 (solute carrier family 13 member 4).

Ensembl:

ensembl_id ENSDARG00000059053

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00053294 False 2787 mRNA 0.48 15 4803698 4832149
TCONS_00053295 True 598 mRNA 0.47 7 4816695 4823728

Neighbor

gene id symbol gene type direction distance location
XLOC_027032 NA coding upstream 88537 4711163 ~ 4715161 (+)
XLOC_027031 CABZ01020834.1 coding upstream 112857 4690726 ~ 4690841 (+)
XLOC_027030 FP236161.1 coding upstream 217814 4585101 ~ 4585884 (+)
XLOC_027029 gnsa coding upstream 279414 4509996 ~ 4524284 (+)
XLOC_027028 NA coding upstream 317710 4482757 ~ 4485988 (+)
XLOC_027034 NA coding downstream 655 4832804 ~ 4926061 (+)
XLOC_027035 NA coding downstream 106617 4938766 ~ 4962622 (+)
XLOC_027036 NA coding downstream 131690 4963839 ~ 4966550 (+)
XLOC_027037 ccnd2b coding downstream 300802 5132951 ~ 5150347 (+)
XLOC_027038 tigarb coding downstream 323968 5156117 ~ 5161877 (+)
XLOC_027027 NA non-coding upstream 405258 4389909 ~ 4398440 (+)
XLOC_027046 NA non-coding downstream 470800 5302949 ~ 5304672 (+)
XLOC_027052 BX324164.1 non-coding downstream 588757 5420906 ~ 5456058 (+)

Expression


Co-expression Network