G786495 (LOC106577539)


Basic Information

Item Value
gene id G786495
gene name LOC106577539
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 26411286 ~ 26411648 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU895769
TCACAGTTGCTGCCCAGGTAGCCGGTGCCGGTGCAGTCGCAGATGTAGCGGTTCCATCCCTCTTTACACAGGCCTCCGTTCCCACAGGGGGTGCTGCTGCACCTCTTCTGAAGCTCGCGGGTGCAGAAGCTGCTGACGCCCGGGGAGCTCTGGATCTCGGCCAGGCGGCGCACGTCGCGGCTCTTGCCGTCGATGAAGAGGTCGCGGACGCAGCCCACGTAGCCGTAGTTGAGCAAGGCGGTCCAGACCTCAGGGGGCAGCACCAGGTCAGAGCGGGTCTCGGGGAGACCCCCCAGGAACATGTCGCTGTCCAGGTCTAGGATCTCACTGCCCTCGTTGGAGTTGAAGGGGATGCTGCGGCTG

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU895769 True 363 lncRNA 0.65 1 26411286 26411648

Neighbor

gene id symbol gene type direction distance location
LOC110531839 LOC106577540 coding upstream 578999 25792766 ~ 25832287 (+)
LOC110531838 drap1 coding upstream 620091 25786096 ~ 25791195 (+)
LOC110531834 LOC106577543 coding upstream 653231 25749902 ~ 25758055 (+)
LOC110531831 LOC106577545 coding upstream 698326 25680279 ~ 25712960 (+)
LOC110531832 LOC106577546 coding upstream 732468 25664478 ~ 25678818 (+)
alpk1 alpk1 coding downstream 784873 27196521 ~ 27213187 (+)
epdl1 LOC106577537 coding downstream 802471 27214119 ~ 27220387 (+)
LOC110531847 NA coding downstream 844955 27256603 ~ 27267492 (+)
LOC110531852 rtn3 coding downstream 929050 27340698 ~ 27375922 (+)
LOC110531855 LOC106577526 coding downstream 977243 27388891 ~ 27399023 (+)
G786493 nrxn2b non-coding upstream 2067 26408919 ~ 26409219 (+)
G786490 NA non-coding upstream 9771 26401272 ~ 26401515 (+)
G786486 NA non-coding upstream 16186 26394901 ~ 26395100 (+)
G786477 NA non-coding upstream 28467 26382607 ~ 26382819 (+)
G786475 NA non-coding upstream 30285 26380733 ~ 26381001 (+)
G786498 NA non-coding downstream 6696 26418344 ~ 26418570 (+)
G786503 NA non-coding downstream 18334 26429982 ~ 26430216 (+)
G786504 NA non-coding downstream 18648 26430296 ~ 26430568 (+)
G786505 NA non-coding downstream 19914 26431562 ~ 26431832 (+)
G786513 NA non-coding downstream 27703 26439351 ~ 26439753 (+)
G786218 NA other upstream 452419 25874527 ~ 25958867 (+)
G785962 LOC105020693 other upstream 668377 25712997 ~ 25742909 (+)
G786091 NA other upstream 864319 25545231 ~ 25546967 (+)
LOC110531825 LOC106577732 other upstream 879009 25525371 ~ 25532692 (+)
LOC110531788 LOC106577570 other upstream 1459190 24872772 ~ 24952098 (+)
G786496 LOC106577539 other downstream 1464 26413112 ~ 26413532 (+)
G787022 LOC106577527 other downstream 967684 27379332 ~ 27379664 (+)
taf6l taf6l other downstream 1074146 27480038 ~ 27487523 (+)
rbpjb LOC106577485 other downstream 2928333 29248127 ~ 29342203 (+)
LOC110531891 NA other downstream 3871027 30282637 ~ 30288163 (+)

Expression


Co-expression Network